Annotations: 6F2S

CryoEM structure of Ageratum Yellow Vein virus (AYVV)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
S [auth H]	Gemini_coat	e6f2sH1	A: beta barrels	X: Nuclear receptor ligand-binding domain	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Gemini_coat	ECOD (v294.2)
Q [auth I]	Levi_coat	e6f2sI1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
U [auth G]	Levi_coat	e6f2sG1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
O [auth J]	Levi_coat	e6f2sJ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
M [auth K]	Levi_coat	e6f2sK1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
K [auth C]	Levi_coat	e6f2sC1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
I [auth D]	Levi_coat	e6f2sD1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
G [auth E]	Levi_coat	e6f2sE1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
E [auth F]	Levi_coat	e6f2sF1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
C [auth B]	Levi_coat	e6f2sB1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)
A	Levi_coat	e6f2sA1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Levi_coat	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
S [auth H]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
Q [auth I]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
U [auth G]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
O [auth J]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
M [auth K]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
K [auth C]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
G [auth E]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
E [auth F]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)
C [auth B]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
T [auth S]	ssDNA loop associated with subunit H	-	-	-
S [auth H]	coat protein subunit H	DNA binding binding nucleic acid binding structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle
Q [auth I]	coat protein subunit I	DNA binding binding nucleic acid binding structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle
B [auth L], D [auth M], F [auth Q], H [auth P], J [auth O], B [auth L], D [auth M], F [auth Q], H [auth P], J [auth O], L [auth N], N [auth V], P [auth U], R [auth T], V [auth R]	ssDNA loop	-	-	-
A, C [auth B], E [auth F], G [auth E], I [auth D], A, C [auth B], E [auth F], G [auth E], I [auth D], K [auth C], M [auth K], O [auth J], U [auth G]	Capsid protein	DNA binding binding nucleic acid binding structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
S [auth H]	IPR000263	Geminivirus AR1/BR1 coat protein	Family
S [auth H]	IPR029053	Viral coat protein subunit	Homologous Superfamily
S [auth H]	IPR000650	Geminivirus AR1 coat protein	Family
Q [auth I]	IPR000263	Geminivirus AR1/BR1 coat protein	Family
Q [auth I]	IPR029053	Viral coat protein subunit	Homologous Superfamily
Q [auth I]	IPR000650	Geminivirus AR1 coat protein	Family
A, C [auth B], E [auth F], G [auth E], I [auth D], A, C [auth B], E [auth F], G [auth E], I [auth D], K [auth C], M [auth K], O [auth J], U [auth G]	IPR000263	Geminivirus AR1/BR1 coat protein	Family
A, C [auth B], E [auth F], G [auth E], I [auth D], A, C [auth B], E [auth F], G [auth E], I [auth D], K [auth C], M [auth K], O [auth J], U [auth G]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, C [auth B], E [auth F], G [auth E], I [auth D], A, C [auth B], E [auth F], G [auth E], I [auth D], K [auth C], M [auth K], O [auth J], U [auth G]	IPR000650	Geminivirus AR1 coat protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6F2S | pdb_00006f2s

CryoEM structure of Ageratum Yellow Vein virus (AYVV)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage