6EY0

N-terminal part (residues 30-212) of PorM with the llama nanobody nb01

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d6ey0e1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
E	d6ey0e2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G	d6ey0g1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G	d6ey0g2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d6ey0h1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d6ey0h2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
F	d6ey0f1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
F	d6ey0f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	V-set_12	e6ey0E1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
G	V-set_12	e6ey0G1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
H	V-set_12	e6ey0H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
A	UNK_F_TYPE	e6ey0A1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6ey0B1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6ey0C1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e6ey0D1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
F	V-set_12	e6ey0F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
E, G, H	Heavy Chain	IGHV1	-	t9ss component cytoplasmic membrane protein porm	SAbDab (2024-04-19)
F	Heavy Chain	IGHV1	-	t9ss component cytoplasmic membrane protein porm	SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF12081	GldM N-terminal domain (GldM_1st)	GldM N-terminal domain	This domain is found in bacteria at the N-terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named ...	This domain is found in bacteria at the N-terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length. This domain has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Cytophaga johnsonae (Flavobacterium johnsoniae), which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR048406	Gliding motility-associated protein GldM, second immunoglobulin-like domain	Domain
A, B, C, D	IPR022719	Gliding motility-associated protein GldM, C-terminal	Domain
A, B, C, D	IPR022720	Gliding motility-associated protein GldM, N-terminal	Domain
A, B, C, D	IPR019859	Gliding motility-associated protein GldM	Family
A, B, C, D	IPR048405	Gliding motility-associated protein GldM, first immunoglobulin-like domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.