6EY0 | pdb_00006ey0

N-terminal part (residues 30-212) of PorM with the llama nanobody nb01

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6ey0f1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
F	d6ey0f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d6ey0h1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d6ey0h2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G	d6ey0g1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G	d6ey0g2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
E	d6ey0e1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
E	d6ey0e2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	V-set_12	e6ey0F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
H	V-set_12	e6ey0H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
G	V-set_12	e6ey0G1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
E	V-set_12	e6ey0E1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
D	UNK_F_TYPE	e6ey0D1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6ey0C1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
B	UNK_F_TYPE	e6ey0B1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6ey0A1	A: alpha bundles	X: Type IX secretion system component GldM helical domain (From Topology)	H: Type IX secretion system component GldM helical domain (From Topology)	T: Type IX secretion system component GldM helical domain	F: UNK_F_TYPE	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
F	Heavy Chain	IGHV1	-	t9ss component cytoplasmic membrane protein porm	SAbDab (2025-12-19)
E, G, H	Heavy Chain	IGHV1	-	t9ss component cytoplasmic membrane protein porm	SAbDab (2025-12-19)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F	llama nanobody nb01	-	-	-
E, G, H	llama nanobody nb01	-	-	-
A, B, C, D	T9SS component cytoplasmic membrane protein PorM	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR048406	Gliding motility-associated protein GldM, second immunoglobulin-like domain	Domain
A, B, C, D	IPR022719	Gliding motility-associated protein GldM, C-terminal	Domain
A, B, C, D	IPR022720	Gliding motility-associated protein GldM, N-terminal	Domain
A, B, C, D	IPR019859	Gliding motility-associated protein GldM	Family
A, B, C, D	IPR048405	Gliding motility-associated protein GldM, first immunoglobulin-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.