6YX7 | pdb_00006yx7

The high resolution structure of allophycocyanin from cyanobacterium Nostoc sp. WR13, the P21212 crystal form.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth LLL]	SCOP2B Superfamily	Globin-like	8103076	3000554	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8103075	4000579	SCOP2 (2022-06-29)
J [auth JJJ]	SCOP2 Superfamily	Globin-like	8103076	3000554	SCOP2 (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	Globin-like	8103076	3000554	SCOP2B (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	Globin-like	8103076	3000554	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	Globin-like	8103076	3000554	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	Globin-like	8103076	3000554	SCOP2B (2022-06-29)
K [auth KKK]	SCOP2B Superfamily	Globin-like	8103074	3000554	SCOP2B (2022-06-29)
I [auth III]	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8103073	4000579	SCOP2 (2022-06-29)
I [auth III]	SCOP2 Superfamily	Globin-like	8103074	3000554	SCOP2 (2022-06-29)
G [auth GGG]	SCOP2B Superfamily	Globin-like	8103074	3000554	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	Globin-like	8103074	3000554	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	Globin-like	8103074	3000554	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	Globin-like	8103074	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth LLL]	RNA_pol_Rpb1_5	e6yx7LLL1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
J [auth JJJ]	RNA_pol_Rpb1_5	e6yx7JJJ1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
H [auth HHH]	RNA_pol_Rpb1_5	e6yx7HHH1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
F [auth FFF]	RNA_pol_Rpb1_5	e6yx7FFF1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
D [auth DDD]	RNA_pol_Rpb1_5	e6yx7DDD1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
B [auth BBB]	CoA_binding_2	e6yx7BBB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: CoA_binding_2	ECOD (develop294)
K [auth KKK]	RNA_pol_Rpb1_5	e6yx7KKK1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
I [auth III]	RNA_pol_Rpb1_5	e6yx7III1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
G [auth GGG]	RNA_pol_Rpb1_5	e6yx7GGG1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
E [auth EEE]	RNA_pol_Rpb1_5	e6yx7EEE1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
C [auth CCC]	RNA_pol_Rpb1_5	e6yx7CCC1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: RNA_pol_Rpb1_5	ECOD (develop294)
A [auth AAA]	CoA_binding_2	e6yx7AAA1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: CoA_binding_2	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	Allophycocyanin beta	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	Allophycocyanin alpha	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR006245	Allophycocyanin, beta subunit	Family
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR012128	Phycobilisome, alpha/beta subunit	Family
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.