6WXX | pdb_00006wxx

crystal structure of cA4-activated Card1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	F_UNCLASSIFIED	e6wxxC3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth C]	DUF1887_3rd	e6wxxC2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: DUF1887_3rd	ECOD (1.6)
D [auth C]	Cas_Cas02710_1st	e6wxxC1	A: a/b three-layered sandwiches	X: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	H: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	T: CARF (CRISPR-associated Rossmann fold) domains	F: Cas_Cas02710_1st	ECOD (1.6)
C [auth D]	F_UNCLASSIFIED	e6wxxD3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth D]	DUF1887_3rd	e6wxxD2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: DUF1887_3rd	ECOD (1.6)
C [auth D]	Cas_Cas02710_1st	e6wxxD1	A: a/b three-layered sandwiches	X: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	H: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	T: CARF (CRISPR-associated Rossmann fold) domains	F: Cas_Cas02710_1st	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e6wxxA3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	DUF1887_3rd	e6wxxA2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: DUF1887_3rd	ECOD (1.6)
B [auth A]	Cas_Cas02710_1st	e6wxxA1	A: a/b three-layered sandwiches	X: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	H: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	T: CARF (CRISPR-associated Rossmann fold) domains	F: Cas_Cas02710_1st	ECOD (1.6)
A [auth B]	F_UNCLASSIFIED	e6wxxB3	A: alpha arrays	X: HTH	H: HTH	T: winged	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth B]	DUF1887_3rd	e6wxxB2	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: DUF1887_3rd	ECOD (1.6)
A [auth B]	Cas_Cas02710_1st	e6wxxB1	A: a/b three-layered sandwiches	X: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	H: CARF (CRISPR-associated Rossmann fold) domains (From Topology)	T: CARF (CRISPR-associated Rossmann fold) domains	F: Cas_Cas02710_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth C]	3.40.50.10770	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Hypothetical protein VC1899 like domain (Restriction endonuclease-like)	CATH (utative)
C [auth D]	3.40.50.10770	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Hypothetical protein VC1899 like domain (Restriction endonuclease-like)	CATH (utative)
B [auth A]	3.40.50.10770	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Hypothetical protein VC1899 like domain (Restriction endonuclease-like)	CATH (utative)
A [auth B]	3.40.50.10770	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Hypothetical protein VC1899 like domain (Restriction endonuclease-like)	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth D], D [auth C]	PF09002	Card1-like, endonuclease domain (Card1_endonuc)	Card1-like, endonuclease domain	This is the endonuclease domain found in a set of bacterial proteins, including Card1 (cyclic-oligoadenylate-activated single-stranded ribonuclease and single-stranded deoxyribonuclease 1) from Treponema succinifaciens (Swiss:F2NWD3), a protein that ...	This is the endonuclease domain found in a set of bacterial proteins, including Card1 (cyclic-oligoadenylate-activated single-stranded ribonuclease and single-stranded deoxyribonuclease 1) from Treponema succinifaciens (Swiss:F2NWD3), a protein that is part of type III CRISPR-Cas immune response system. This protein consists of a CARF (CRISPR-associated Rossman fold) domain at the N-terminal, an helical hinge domain and a C-terminal endonuclease domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth Y], F [auth X]	cA4	-	-	-
A [auth B], B [auth A], C [auth D], D [auth C]	Card1	binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D], D [auth C]	IPR056339	Card1, CARF domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C]	IPR056478	HTH_Card1	Unknown
A [auth B], B [auth A], C [auth D], D [auth C]	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C]	IPR015093	Card1, endonuclease domain	Domain
A [auth B], B [auth A], C [auth D], D [auth C]	IPR011856	tRNA endonuclease-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.