6WXK | pdb_00006wxk

PHF23 PHD Domain Apo

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	SIMPL	e6wxkE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SIMPL	ECOD (v294.1)
D	SIMPL	e6wxkD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SIMPL	ECOD (v294.1)
C	SIMPL	e6wxkC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SIMPL	ECOD (v294.1)
B	SIMPL	e6wxkB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SIMPL	ECOD (v294.1)
A	SIMPL	e6wxkA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: SIMPL	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (utative)
D	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (utative)
C	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (utative)
B	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (utative)
A	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF13831	PHD-finger (PHD_2)	PHD-finger	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E	PHD finger protein 23	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	catabolic process regulation of cellular component organization regulation of cellular process macroautophagy autophagy negative regulation of biological process negative regulation of organelle assembly autophagosome organization regulation of autophagy cellular component biogenesis cellular component organization cellular component assembly negative regulation of cellular process cellular component organization or biogenesis catabolic process regulation of cellular component organization regulation of cellular process macroautophagy autophagy negative regulation of biological process negative regulation of organelle assembly autophagosome organization regulation of autophagy cellular component biogenesis cellular component organization cellular component assembly negative regulation of cellular process cellular component organization or biogenesis process utilizing autophagic mechanism negative regulation of autophagosome assembly negative regulation of catabolic process regulation of biological process autophagosome assembly organelle assembly vacuole organization negative regulation of cellular component organization negative regulation of metabolic process biological regulation regulation of autophagosome assembly regulation of vacuole organization regulation of catabolic process regulation of cellular component biogenesis regulation of organelle organization negative regulation of macroautophagy organelle organization regulation of macroautophagy negative regulation of organelle organization negative regulation of autophagy regulation of organelle assembly cellular process metabolic process regulation of metabolic process regulation of autophagosome maturation protein-containing complex disassembly regulation of protein-containing complex disassembly autophagosome maturation negative regulation of protein-containing complex disassembly cellular component disassembly protein-containing complex organization negative regulation of autophagosome maturation regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification macromolecule metabolic process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR001965	Zinc finger, PHD-type	Domain
A, B, C, D, E	IPR019787	Zinc finger, PHD-finger	Domain
A, B, C, D, E	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
A, B, C, D, E	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E	Pharos: Q9BUL5	atypical teratoid rhabdoid tumor malignant ependymoma rheumatoid arthritis Hashimoto thyroiditis medulloblastoma vascular disease hypothyroidism ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.