6WJH

Crystal structure of MAGE-A11 bound to the PCF11 degron

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01454	e6wjhA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01454	ECOD (1.6)
B	PF01454	e6wjhB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01454	ECOD (1.6)
C	PF01454	e6wjhC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01454	ECOD (1.6)
D	PF01454	e6wjhD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: PF01454	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01454	MAGE homology domain (MAGE)	MAGE homology domain	The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this fam ...	The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex [2-3]. Nse3 has been demonstrated to be important for meiosis[3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Fusion protein of PCF11 and MAGE-A11	histone deacetylase binding protein binding binding enzyme binding RNA binding organic cyclic compound binding nucleic acid binding mRNA binding basal transcription machinery binding RNA polymerase binding RNA polymerase II complex binding basal RNA polymerase II transcription machinery binding RNA polymerase core enzyme binding	regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of cellular process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process cellular process DNA-templated transcription termination termination of RNA polymerase II transcription co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway mRNA processing RNA 3'-end processing RNA processing mRNA 3'-end processing mRNA metabolic process nucleic acid catabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen mitochondrion protein-containing complex nuclear protein-containing complex mRNA cleavage factor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR041899	MAGE homology domain, winged helix WH2 motif	Homologous Superfamily
A, B, C, D	IPR002190	MAGE homology domain	Domain
A, B, C, D	IPR021072	Melanoma associated antigen, N-terminal	Domain
A, B, C, D	IPR041898	MAGE homology domain, winged helix WH1 motif	Homologous Superfamily
A, B, C, D	IPR037445	Melanoma-associated antigen	Family
A, B, C, D	IPR048832	PCF11, charged region	Domain
A, B, C, D	IPR008942	ENTH/VHS	Homologous Superfamily
A, B, C, D	IPR048829	Pre-mRNA cleavage complex 2 protein Pcf11, RFEGP repeat	Repeat
A, B, C, D	IPR047415	Pcf11, CID domain	Domain
A, B, C, D	IPR006569	CID domain	Domain
A, B, C, D	IPR021605	Pcf11, Clp1-ID	Domain
A, B, C, D	IPR048830	Pre-mRNA cleavage complex 2 protein Pcf11, helical domain	Domain
A, B, C, D	IPR045154	Protein PCF11-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: O94913	intellectual disability psoriasis malignant mesothelioma non-small cell lung carcinoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.