6WJH | pdb_00006wjh

Crystal structure of MAGE-A11 bound to the PCF11 degron

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MAGE	e6wjhA1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MAGE	ECOD (1.6)
B	MAGE	e6wjhB1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MAGE	ECOD (1.6)
C	MAGE	e6wjhC1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MAGE	ECOD (1.6)
D	MAGE	e6wjhD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: MAGE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.1200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH1 motif	CATH (utative)
A	1.10.10.1210	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH2 motif	CATH (utative)
B	1.10.10.1200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH1 motif	CATH (utative)
B	1.10.10.1210	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH2 motif	CATH (utative)
C	1.10.10.1200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH1 motif	CATH (utative)
C	1.10.10.1210	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH2 motif	CATH (utative)
D	1.10.10.1200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH1 motif	CATH (utative)
D	1.10.10.1210	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	MAGE homology domain, winged helix WH2 motif	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01454	MAGE homology domain (MAGE)	MAGE homology domain	The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this fam ...	The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex [2-3]. Nse3 has been demonstrated to be important for meiosis[3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Fusion protein of PCF11 and MAGE-A11	RNA binding binding nucleic acid binding mRNA binding basal transcription machinery binding RNA polymerase binding protein binding RNA polymerase II complex binding basal RNA polymerase II transcription machinery binding RNA polymerase core enzyme binding enzyme binding histone deacetylase binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process DNA-templated transcription termination nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process cellular process macromolecule metabolic process termination of RNA polymerase II transcription mRNA 3'-end processing co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway mRNA processing mRNA metabolic process RNA 3'-end processing RNA processing regulation of cellular process negative regulation of biological process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex mRNA cleavage factor complex membrane-enclosed lumen intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex mRNA cleavage factor complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cytosol intracellular membraneless organelle nuclear body membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR048832	PCF11, charged region	Domain
A, B, C, D	IPR008942	ENTH/VHS	Homologous Superfamily
A, B, C, D	IPR048829	Pre-mRNA cleavage complex 2 protein Pcf11, RFEGP repeat	Repeat
A, B, C, D	IPR047415	Pcf11, CID domain	Domain
A, B, C, D	IPR054127	Pcf11, C-terminal domain	Domain
A, B, C, D	IPR006569	CID domain	Domain
A, B, C, D	IPR021605	Pcf11, Clp1-ID	Domain
A, B, C, D	IPR048830	Pre-mRNA cleavage complex 2 protein Pcf11, helical domain	Domain
A, B, C, D	IPR045154	Protein PCF11-like	Family
A, B, C, D	IPR041899	MAGE homology domain, winged helix WH2 motif	Homologous Superfamily
A, B, C, D	IPR002190	MAGE homology domain	Domain
A, B, C, D	IPR021072	Melanoma associated antigen, N-terminal	Domain
A, B, C, D	IPR041898	MAGE homology domain, winged helix WH1 motif	Homologous Superfamily
A, B, C, D	IPR037445	Melanoma-associated antigen	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P43364	osteosarcoma intellectual disability psoriasis malignant mesothelioma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.