Annotations: 6W4N

Co-crystal structure of Pd_dinase with probe glycine-propargylglycine-AOMK

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Raptor_N	e6w4nF1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
E	POLH-Rev1_HhH	e6w4nE1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: POLH-Rev1_HhH	ECOD (v294.2)
D	POLH-Rev1_HhH	e6w4nD1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: POLH-Rev1_HhH	ECOD (v294.2)
C	Raptor_N	e6w4nC1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
B	Raptor_N	e6w4nB1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)
A	Raptor_N	e6w4nA1	A: beta barrels	X: DNA methylase specificity domain	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF03051	Peptidase C1-like family (Peptidase_C1_2)	Peptidase C1-like family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Aminopeptidase	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type aminopeptidase activity aminopeptidase activity hydrolase activity cysteine-type exopeptidase activity exopeptidase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to toxic substance catabolic process oxoacid metabolic process sulfur amino acid metabolic process amino acid metabolic process organic acid catabolic process proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process response to stimulus response to chemical response to toxic substance catabolic process oxoacid metabolic process sulfur amino acid metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process non-proteinogenic amino acid metabolic process carboxylic acid catabolic process small molecule metabolic process sulfur compound metabolic process amino acid catabolic process homocysteine metabolic process non-proteinogenic amino acid catabolic process L-amino acid catabolic process carboxylic acid metabolic process L-homocysteine catabolic process L-amino acid metabolic process sulfur compound catabolic process alpha-amino acid catabolic process sulfur amino acid catabolic process small molecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000169	Cysteine peptidase, cysteine active site	Active Site
A, B, C, D, E A, B, C, D, E, F	IPR004134	Peptidase C1B, bleomycin hydrolase	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6W4N | pdb_00006w4n

Co-crystal structure of Pd_dinase with probe glycine-propargylglycine-AOMK

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage