6W17
Structure of Dip1-activated Arp2/3 complex with nucleated actin filament
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | WD40 repeat-like | 8085897 | 3001694 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Arp2/3 complex subunits | 8085061 | 3000751 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00022 | e6w17A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
B | PF00022 | e6w17B1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
C | PF00400 | e6w17C1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
D | PF04045 | e6w17D2 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: PF04045 | ECOD (1.6) |
E | PF04062 | e6w17E1 | A: alpha bundles | X: Arp2/3 complex 21 kDa subunit ARPC3 (From Topology) | H: Arp2/3 complex 21 kDa subunit ARPC3 (From Topology) | T: Arp2/3 complex 21 kDa subunit ARPC3 | F: PF04062 | ECOD (1.6) |
F | PF05856 | e6w17F1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Arp2/3 complex subunits (From Topology) | T: Arp2/3 complex subunits | F: PF05856 | ECOD (1.6) |
G | PF04699 | e6w17G1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Arp2/3 complex 16 KDa subunit ARPC5 (From Topology) | T: Arp2/3 complex 16 KDa subunit ARPC5 | F: PF04699 | ECOD (1.6) |
I | PF00022 | e6w17I2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
J | PF00022 | e6w17J1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
K | PF00022 | e6w17K1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
L | PF00022 | e6w17L1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00022 | Actin (Actin) | Actin | - | Family | |
PF00022 | Actin (Actin) | Actin | - | Family | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc (P34-Arc) | Arp2/3 complex, 34 kD subunit p34-Arc | - | Family | |
PF04062 | ARP2/3 complex ARPC3 (21 kDa) subunit (P21-Arc) | ARP2/3 complex ARPC3 (21 kDa) subunit | - | Family | |
PF05856 | ARP2/3 complex 20 kDa subunit (ARPC4) (ARPC4) | ARP2/3 complex 20 kDa subunit (ARPC4) | - | Family | |
PF04699 | ARP2/3 complex 16 kDa subunit (p16-Arc) (P16-Arc) | ARP2/3 complex 16 kDa subunit (p16-Arc) | The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20 ... | Domain | |
PF09431 | SPIN90/Ldb17, leucine-rich domain (SPIN90_LRD) | SPIN90/Ldb17, leucine-rich domain | This is the conserved leucine-rich domain (LRD) within the C-terminal domain of SPIN90 (also known as NCK interacting protein with SH3 domain (NCKIPSD)) from animals, Ldb17 from budding yeasts and Dip1 from fission yeasts [1]. Ldb17 is involved in th ... | Domain | |
PF00022 | Actin (Actin) | Actin | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 | |
ALO | Parent Component: THR :  AA0317 | |
G5G | Parent Component: LEU :  AA0317 | |
HYP | Parent Component: PRO :  AA0317 , AA0030 :  1'-methyl-L-histidine MOD:00322 , 4-hydroxy-L-proline MOD:00039 |