6VGG

Crystal structure of the DNA binding domains of human transcription factor ERG, human Runx2 bound to core binding factor beta (Cbfb), and mithramycin, in complex with 16mer DNA CAGAGGATGTGGCTTC


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B Superfamilyp53-like transcription factors8102164 3000758 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyCore binding factor beta CBF8042548 3001169 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEtse6vggA1 A: alpha arraysX: HTHH: HTHT: wingedF: EtsECOD (1.6)
DRunte6vggD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Common fold of diphtheria toxin/transcription factors/cytochrome fF: RuntECOD (1.6)
E [auth G]CBF_betae6vggG1 A: beta barrelsX: CBF-likeH: Core binding factor beta, CBF (From Topology)T: Core binding factor beta, CBFF: CBF_betaECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00178Ets-domain (Ets)Ets-domain- Domain
PF00853Runt domain (Runt)Runt domain- Domain
E [auth G]PF02312Core binding factor beta subunit (CBF_beta)Core binding factor beta subunit- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transcriptional regulator ERG
DNA (5'-D(P*CP*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3')---
DNA (5'-D(P*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*TP*G)-3')---
Runt-related transcription factor 2
E [auth G]Core-binding factor subunit beta

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP11308
PharosQ13950
E [auth G]PharosQ13951