6VGG
Crystal structure of the DNA binding domains of human transcription factor ERG, human Runx2 bound to core binding factor beta (Cbfb), and mithramycin, in complex with 16mer DNA CAGAGGATGTGGCTTC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ets | e6vggA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ets | ECOD (1.6) |
D | Runt | e6vggD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: Runt | ECOD (1.6) |
E [auth G] | CBF_beta | e6vggG1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: CBF_beta | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00178 | Ets-domain (Ets) | Ets-domain | - | Domain | |
PF00853 | Runt domain (Runt) | Runt domain | - | Domain | |
E [auth G] | PF02312 | Core binding factor beta subunit (CBF_beta) | Core binding factor beta subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013761 | Sterile alpha motif/pointed domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR000418 | Ets domain | Domain | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR046328 | ETS family | Family | |
IPR003118 | Pointed domain | Domain | |
IPR012346 | p53/RUNT-type transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR013524 | Runt domain | Domain | |
IPR016554 | Runt-related transcription factor RUNX | Family | |
IPR008967 | p53-like transcription factor, DNA-binding domain superfamily | Homologous Superfamily | |
IPR000040 | Acute myeloid leukemia 1 protein (AML1)/Runt | Family | |
IPR027384 | Runx, central domain superfamily | Homologous Superfamily | |
IPR013711 | Runx, C-terminal domain | Domain | |
E [auth G] | IPR003417 | Core-binding factor, beta subunit | Family |
E [auth G] | IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily |