6UWR | pdb_00006uwr

Clostridium difficile binary toxin translocase CDTb in asymmetric tetradecamer conformation

External Resource: Annotation

Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
M	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
L	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
K	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
J	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
I	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)
H	2.60.120.240	Mainly Beta	Sandwich	Jelly Rolls	Protective antigen, heptamerisation domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	ADP-ribosyltransferase binding component	cation binding ion binding binding metal ion binding small molecule binding transferase activity catalytic activity	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular process cellular component organization or biogenesis	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR035331	Clostridial binary toxin B/anthrax toxin PA, domain 3	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR011658	PA14 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR027439	Protective antigen, heptamerisation domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR035088	Protective antigen, Ca-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR037149	Protective antigen, heptamerisation domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	IPR003896	Bacterial exotoxin B	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	OPM	Transmembrane	Beta-barrel transmembrane	Pore-forming beta-sheet toxins	Channel-forming Bacillus protective antigen (n=14,S=14)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes	binary toxin translocase CDTb in asymmetric tetradecamer conformation

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.