6U8J | pdb_00006u8j

Crystal structure of 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase/phospho-2-dehydro-3-deoxyheptonate aldolase (Aro3) from Candida auris

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6u8jh_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
G	d6u8jg1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
G	d6u8jg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
F	d6u8jf1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
F	d6u8jf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
E	d6u8je1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
E	d6u8je2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
D	d6u8jd1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
D	d6u8jd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
C	d6u8jc1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
C	d6u8jc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
B	d6u8jb1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
B	d6u8jb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
A	d6u8ja1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	Class I DAHP synthetase	automated matches	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)
A	d6u8ja2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candidozyma auris ) [TaxId: 498019 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)
D	SCOP2 Family	Class I DAHP synthetase	8096661	4003245	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Aldolase	8096662	3000445	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8096662	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	PepX_N	e6u8jH1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)
G	PepX_N	e6u8jG1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)
F	PepX_N	e6u8jF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)
E	PepX_N	e6u8jE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)
D	Copper-bind	e6u8jD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: Copper-bind	ECOD (v294.1)
C	PepX_N	e6u8jC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)
B	PepX_N	e6u8jB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)
A	PepX_N	e6u8jA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: PepX_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
G	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
F	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
E	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
D	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
C	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00793	DAHP synthetase I family (DAHP_synth_1)	DAHP synthetase I family	Members of this family catalyse the first step in aromatic amino acid biosynthesis from chorismate. E-coli has three related synthetases, which are inhibited by different aromatic amino acids. This family also includes KDSA which has very similar cat ...	Members of this family catalyse the first step in aromatic amino acid biosynthesis from chorismate. E-coli has three related synthetases, which are inhibited by different aromatic amino acids. This family also includes KDSA which has very similar catalytic activity but is involved in the first step of liposaccharide biosynthesis. The enzyme is also part of the shikimate pathway, EC:2.5.1.54.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Phospho-2-dehydro-3-deoxyheptonate aldolase	transferase activity 3-deoxy-7-phosphoheptulonate synthase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	amino acid biosynthetic process biosynthetic process amino acid metabolic process primary metabolic process metabolic process cellular process aromatic amino acid family biosynthetic process aromatic amino acid metabolic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process amino acid biosynthetic process biosynthetic process amino acid metabolic process primary metabolic process metabolic process cellular process aromatic amino acid family biosynthetic process aromatic amino acid metabolic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process small molecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006219	DAHP synthase, class 1	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006218	DAHP synthetase I/KDSA	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.