6SKA | pdb_00006ska

Teneurin 2 in complex with Latrophilin 1 Lec-Olf domains

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth D]	SCOP2B Superfamily	Sea urchin egg lectin (SUEL)-like	8052998	3002155	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth D]	Gal_Lectin	e6skaD1	A: beta sandwiches	X: jelly-roll	H: Latrophilin 1 gal_lectin domain (From Topology)	T: Latrophilin 1 gal_lectin domain	F: Gal_Lectin	ECOD (1.6)
B [auth D]	OLF	e6skaD2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: OLF	ECOD (1.6)
A	UNK_F_TYPE	e6skaA2	A: beta meanders	X: Rearrangement hotspot (RHS) repeats protein (From Topology)	H: Rearrangement hotspot (RHS) repeats protein (From Topology)	T: Rearrangement hotspot (RHS) repeats protein	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6skaA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6skaA4	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Prealbumin-like	F: UNK_F_TYPE	ECOD (1.6)
A	SGL_2	e6skaA5	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: SGL_2	ECOD (1.6)
A	UNK_F_TYPE	e6skaA6	A: a+b two layers	X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase (From Topology)	T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6skaA3	A: few secondary structure elements	X: His-Me finger endonucleases (From Homology)	H: His-Me finger endonucleases	T: Inactive Tox-GHH domain of teneurin	F: UNK_F_TYPE	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth D]	2.60.120.740	Mainly Beta	Sandwich	Jelly Rolls	Rhamnose-binding lectin domain (RBL)	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth D]	PF02191	Olfactomedin-like domain (OLF)	Olfactomedin-like domain	-	Repeat
B [auth D]	PF02140	D-galactoside/L-rhamnose binding SUEL lectin domain (SUEL_Lectin)	D-galactoside/L-rhamnose binding SUEL lectin domain	The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [1]. The sea urchin egg lectin (SUEL) forms ...	The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [1]. The sea urchin egg lectin (SUEL) forms a new class of lectins that binds D-galactoside and L-rhamnose, with preference for L-rhamnose [1,2].	Domain
A	PF15636	GHH signature containing HNH/Endo VII superfamily nuclease toxin (Tox-GHH)	GHH signature containing HNH/Endo VII superfamily nuclease toxin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth D]	Adhesion G protein-coupled receptor L1	molecular transducer activity G protein-coupled receptor activity transmembrane signaling receptor activity signaling receptor activity cell adhesion molecule binding protein binding binding latrotoxin receptor activity carbohydrate binding	positive regulation of nervous system development multicellular organismal process regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development positive regulation of nervous system development multicellular organismal process regulation of cellular process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development regulation of multicellular organismal process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality positive regulation of cellular process system development developmental process regulation of multicellular organismal development regulation of biological process positive regulation of cellular component biogenesis biological regulation nervous system development regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization cell junction organization positive regulation of multicellular organismal process cellular process synapse assembly positive regulation of synapse assembly cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling signal transduction cell communication	cell periphery cellular anatomical structure plasma membrane membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane growth cone axon cell projection distal axon cell periphery cellular anatomical structure plasma membrane membrane presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth
A	Teneurin-2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding signaling receptor binding cell adhesion molecule binding protein heterodimerization activity protein dimerization activity identical protein binding protein homodimerization activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication filopodium assembly regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation cellular process signal transduction cell communication filopodium assembly regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process regulation of filopodium assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization cellular component assembly positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of filopodium assembly positive regulation of cellular process plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly cell adhesion cell-cell adhesion negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process multicellular organismal process cellular developmental process cell development nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation neuron development anatomical structure development system development	cellular anatomical structure cell junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction somatodendritic compartment cell projection cellular anatomical structure cell junction cell periphery postsynapse postsynaptic membrane synapse membrane plasma membrane plasma membrane region synaptic membrane cell-cell junction anchoring junction somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection growth cone axon distal axon site of polarized growth membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system neuron spine dendritic spine actin-based cell projection filopodium nucleus endoplasmic reticulum membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen membraneless organelle PML body nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D]	IPR017983	GPCR, family 2, secretin-like, conserved site	Conserved Site
B [auth D]	IPR036445	GPCR family 2, extracellular hormone receptor domain superfamily	Homologous Superfamily
B [auth D]	IPR000832	GPCR, family 2, secretin-like	Family
B [auth D]	IPR043159	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Homologous Superfamily
B [auth D]	IPR000203	GPS motif	Conserved Site
B [auth D]	IPR003112	Olfactomedin-like domain	Domain
B [auth D]	IPR031234	Latrophilin-1, , transmembrane domain	Domain
B [auth D]	IPR017981	GPCR, family 2-like, 7TM	Domain
B [auth D]	IPR003924	GPCR, family 2, latrophilin	Family
B [auth D]	IPR001879	GPCR, family 2, extracellular hormone receptor domain	Domain
B [auth D]	IPR003334	GPCR, family 2, latrophilin, C-terminal	Domain
B [auth D]	IPR032471	AGRL2-4 , GAIN subdomain A	Domain
B [auth D]	IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	Domain
B [auth D]	IPR046338	GAIN domain superfamily	Homologous Superfamily
B [auth D]	IPR057244	GAIN, subdomain B	Domain
A	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
A	IPR056822	Teneurin, NHL domain	Domain
A	IPR008969	Carboxypeptidase-like, regulatory domain superfamily	Homologous Superfamily
A	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A	IPR000742	EGF-like domain	Domain
A	IPR028916	Tox-GHH domain	Domain
A	IPR006530	YD repeat	Repeat
A	IPR022385	Rhs repeat-associated core	Domain
A	IPR051216	Teneurin	Family
A	IPR056820	Teneurin, TTR-like domain	Domain
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR056823	Teneurin-like, YD-shell	Domain
A	IPR009471	Teneurin intracellular, N-terminal	Domain