Annotations: 6S6Y

X-ray crystal structure of the formyltransferase/hydrolase complex (FhcABCD) from Methylorubrum extorquens in complex with methylofuran

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d6s6yp1	Alpha and beta proteins (a+b)	Ferredoxin-like	Formylmethanofuran:tetrahydromethanopterin formyltransferase	automated matches	automated matches	(Methylorubrum extorquens PA1 ) [TaxId: 419610 ],	SCOPe (2.08)
L	d6s6yl1	Alpha and beta proteins (a+b)	Ferredoxin-like	Formylmethanofuran:tetrahydromethanopterin formyltransferase	automated matches	automated matches	(Methylorubrum extorquens PA1 ) [TaxId: 419610 ],	SCOPe (2.08)
H	d6s6yh1	Alpha and beta proteins (a+b)	Ferredoxin-like	Formylmethanofuran:tetrahydromethanopterin formyltransferase	automated matches	automated matches	(Methylorubrum extorquens PA1 ) [TaxId: 419610 ],	SCOPe (2.08)
D	d6s6yd1	Alpha and beta proteins (a+b)	Ferredoxin-like	Formylmethanofuran:tetrahydromethanopterin formyltransferase	automated matches	automated matches	(Methylorubrum extorquens PA1 ) [TaxId: 419610 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	ATP-synt	e6s6yP1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
L	ATP-synt	e6s6yL1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
H	ATP-synt	e6s6yH1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
D	ATP-synt	e6s6yD1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
O	ATP-synt	e6s6yO1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
K	ATP-synt	e6s6yK1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
G	ATP-synt	e6s6yG1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
C	ATP-synt	e6s6yC1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
N	ATP-synt	e6s6yN1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
J	ATP-synt	e6s6yJ1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
F	ATP-synt	e6s6yF1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
B	ATP-synt	e6s6yB1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
M	ATP-synt	e6s6yM1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
I	ATP-synt	e6s6yI1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
E	ATP-synt	e6s6yE1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)
A	ATP-synt	e6s6yA1	A: alpha arrays	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat)	T: Acyl-CoA N-acyltransferases (Nat)	F: ATP-synt	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.30.70.520	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
L	3.30.70.520	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
H	3.30.70.520	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)
D	3.30.70.520	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D, H, L, P	PF01913	Formylmethanofuran-tetrahydromethanopterin formyltransferase (FTR)	Formylmethanofuran-tetrahydromethanopterin formyltransferase	This enzyme EC:2.3.1.101 is involved in archaebacteria in the formation of methane from carbon dioxide. N-terminal distal lobe of alpha+beta ferredoxin-like fold. SCOP reports fold duplication with C-terminal proximal lobe.	Domain
D, H, L, P	PF02741	FTR, proximal lobe (FTR_C)	FTR, proximal lobe	The FTR (Formylmethanofuran--tetrahydromethanopterin formyltransferase) enzyme EC:2.3.1.101 is involved in archaebacteria in the formation of methane from carbon dioxide. C-terminal proximal lobe of alpha+beta ferredoxin-like fold. SCOP reports fold ...	The FTR (Formylmethanofuran--tetrahydromethanopterin formyltransferase) enzyme EC:2.3.1.101 is involved in archaebacteria in the formation of methane from carbon dioxide. C-terminal proximal lobe of alpha+beta ferredoxin-like fold. SCOP reports fold duplication with N-terminal distal lobe.	Domain
A, E, I, M	PF07969	Amidohydrolase family (Amidohydro_3)	Amidohydrolase family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, H, L, P	Formylmethanofuran--tetrahydromethanopterin formyltransferase	formylmethanofuran-tetrahydromethanopterin N-formyltransferase activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity	cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical metabolic process cellular process small molecule metabolic process formaldehyde metabolic process aldehyde catabolic process small molecule catabolic process cellular response to toxic substance one-carbon metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
C, G, K, O	Formylmethanofuran dehydrogenase subunit C	cation binding transition metal ion binding ion binding binding metal ion binding small molecule binding formylmethanofuran dehydrogenase activity oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity	cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical metabolic process cellular process small molecule metabolic process formaldehyde metabolic process aldehyde catabolic process small molecule catabolic process cellular response to toxic substance cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis hydrocarbon biosynthetic process anaerobic respiration one-carbon metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
B, F, J, N	Tungsten-containing formylmethanofuran dehydrogenase, subunit B	-	cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical metabolic process cellular process small molecule metabolic process formaldehyde metabolic process aldehyde catabolic process small molecule catabolic process cellular response to toxic substance one-carbon metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm
A, E, I, M	Formylmethanofuran dehydrogenase subunit A	hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding ion binding binding metal ion binding small molecule binding	cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical cellular response to stimulus cellular detoxification catabolic process response to stimulus formaldehyde catabolic process detoxification response to oxygen-containing compound cellular response to oxygen-containing compound aldehyde metabolic process response to toxic substance cellular detoxification of aldehyde cellular response to chemical stimulus cellular response to aldehyde response to chemical metabolic process cellular process small molecule metabolic process formaldehyde metabolic process aldehyde catabolic process small molecule catabolic process cellular response to toxic substance one-carbon metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, H, L, P	IPR014053	Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr	Family
D, H, L, P	IPR022667	Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, N-terminal	Domain
D, H, L, P	IPR023447	Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, ferredoxin-like superfamily	Homologous Superfamily
D, H, L, P	IPR002770	Formylmethanofuran: tetrahydromethanopterin formyltransferase Ftr, C-terminal	Domain
C, G, K, O	IPR036485	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Homologous Superfamily
C, G, K, O	IPR017550	Formylmethanofuran dehydrogenase subunit C	Domain
A, E, I, M	IPR012027	Formylmethanofuran dehydrogenase, subunit A	Family
A, E, I, M	IPR013108	Amidohydrolase 3	Domain
A, E, I, M	IPR050378	Metallo-dependent Hydrolases Superfamily	Family
A, E, I, M	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
A, E, I, M	IPR032466	Metal-dependent hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.