6RLW | pdb_00006rlw

Structure of the human 8-oxoguanine DNA Glycosylase hOGG1 in complex with inhibitor TH5487

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth EEE]	SCOP2B Superfamily	TATA-box binding protein-like	8036320	3000705	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	DNA-glycosylase	8036319	3000905	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	DNA-glycosylase	8036319	3000905	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	TATA-box binding protein-like	8036320	3000705	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	DNA-glycosylase	8036319	3000905	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	TATA-box binding protein-like	8036320	3000705	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	TATA-box binding protein-like	8036320	3000705	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	DNA-glycosylase	8036319	3000905	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	TATA-box binding protein-like	8036320	3000705	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	DNA-glycosylase	8036319	3000905	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth EEE]	Fungal_lectin	e6rlwEEE1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (v294.1)
D [auth DDD]	Fungal_lectin	e6rlwDDD1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (v294.1)
C [auth CCC]	Fungal_lectin	e6rlwCCC1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (v294.1)
B [auth BBB]	Fungal_lectin	e6rlwBBB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (v294.1)
A [auth AAA]		e6rlwAAA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F:	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	PF07934	8-oxoguanine DNA glycosylase, N-terminal domain (OGG_N)	8-oxoguanine DNA glycosylase, N-terminal domain	-	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	PF00730	HhH-GPD superfamily base excision DNA repair protein (HhH-GPD)	HhH-GPD superfamily base excision DNA repair protein	This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate [2]. This includes endonucle ...	This family contains a diverse range of structurally related DNA repair proteins. The superfamily is called the HhH-GPD family after its hallmark Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate [2]. This includes endonuclease III, EC:4.2.99.18 and MutY an A/G-specific adenine glycosylase, both have a C terminal 4Fe-4S cluster. The family also includes 8-oxoguanine DNA glycosylases such as Swiss:P53397. The methyl-CPG binding protein MBD4 Swiss:Q9Z2D7 also contains a related domain [1] that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other members of the AlkA family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	N-glycosylase/DNA lyase	DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding damaged DNA binding hydrolase activity, acting on glycosyl bonds oxidized base lesion DNA N-glycosylase activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding damaged DNA binding hydrolase activity, acting on glycosyl bonds oxidized base lesion DNA N-glycosylase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid oxidized purine nucleobase lesion DNA N-glycosylase activity hydrolase activity 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity cytoskeletal protein binding microtubule binding protein binding tubulin binding DNA-(apurinic or apyrimidinic site) endonuclease activity endonuclease activity DNA nuclease activity DNA endonuclease activity nuclease activity class I DNA-(apurinic or apyrimidinic site) endonuclease activity lyase activity carbon-oxygen lyase activity oxidized DNA binding oxidized purine DNA binding enzyme binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair DNA modification depurination macromolecule modification cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process base-excision repair DNA modification depurination macromolecule modification metabolic process macromolecule metabolic process base-excision repair, AP site formation DNA repair regulation of cellular process regulation of double-strand break repair double-strand break repair via single-strand annealing regulation of cellular response to stress negative regulation of biological process regulation of primary metabolic process negative regulation of DNA repair regulation of response to stress negative regulation of double-strand break repair negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of double-strand break repair via single-strand annealing regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process double-strand break repair regulation of biological process negative regulation of response to stimulus negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process regulation of DNA repair regulation of response to stimulus negative regulation of DNA metabolic process regulation of metabolic process regulation of DNA metabolic process response to radiation response to abiotic stimulus pyrimidine deoxyribonucleotide catabolic process deoxyribonucleotide catabolic process catabolic process pyrimidine deoxyribonucleotide metabolic process pyrimidine-containing compound catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process deoxyribose phosphate catabolic process pyrimidine nucleotide metabolic process pyrimidine nucleotide catabolic process deoxyribonucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process depyrimidination nucleotide catabolic process nucleoside phosphate metabolic process carbohydrate derivative catabolic process pyrimidine-containing compound metabolic process 2'-deoxyribonucleotide metabolic process nucleotide metabolic process nucleobase-containing compound catabolic process organophosphate metabolic process positive regulation of biological process RNA metabolic process positive regulation of gene expression via chromosomal CpG island demethylation positive regulation of macromolecule biosynthetic process positive regulation of gene expression, epigenetic cellular component organization RNA biosynthetic process positive regulation of metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II positive regulation of biosynthetic process chromatin organization chromatin remodeling positive regulation of macromolecule metabolic process cellular component organization or biogenesis positive regulation of cellular process transcription initiation at RNA polymerase II promoter regulation of biosynthetic process epigenetic regulation of gene expression gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process DNA-templated transcription initiation regulation of gene expression biosynthetic process positive regulation of gene expression transcription initiation-coupled chromatin remodeling regulation of macromolecule biosynthetic process regulation of RNA metabolic process regulation of RNA biosynthetic process regulation of DNA-templated transcription cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound response to reactive oxygen species cellular response to reactive oxygen species response to oxidative stress cellular response to chemical stimulus response to chemical nucleotide-excision repair positive regulation of DNA-templated transcription regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix intracellular membraneless organelle nuclear speck ribonucleoprotein granule nuclear body nucleoplasm membraneless organelle supramolecular complex nuclear ribonucleoprotein granule cytosol protein-containing complex mitochondrial matrix

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	IPR003265	HhH-GPD domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	IPR023170	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	IPR011257	DNA glycosylase	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	IPR052054	Oxidative DNA damage repair enzyme	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	IPR012904	8-oxoguanine DNA glycosylase, N-terminal	Domain
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	IPR004577	8-oxoguanine DNA-glycosylase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE]	Pharos: O15527	renal cell carcinoma Huntington disease developmental coordination disorder heart disease sarcomatoid renal cell carcinoma lymphoma brain disease chromophobe renal cell carcinoma collecting duct carcinoma Prenatal Exposure Delayed Effects prostate cancer adenocarcinoma tubular adenocarcinoma male infertility papillary renal cell carcinoma renal cell carcinoma Huntington disease developmental coordination disorder heart disease sarcomatoid renal cell carcinoma lymphoma brain disease chromophobe renal cell carcinoma collecting duct carcinoma Prenatal Exposure Delayed Effects prostate cancer adenocarcinoma tubular adenocarcinoma male infertility papillary renal cell carcinoma granular cell carcinoma hyperplasia type 2 diabetes mellitus clear cell renal carcinoma nonpapillary renal cell carcinoma primitive neuroectodermal tumor psoriasis inherited disease susceptibility lung benign neoplasm tuberculosis astrocytic tumor malignant mesothelioma medulloblastoma noise induced hearing loss obesity disorder cribriform carcinoma of breast ovarian cancer hereditary clear cell renal cell carcinoma renal carcinoma juvenile Huntington disease skin disease lung cancer breast carcinoma oligodendroglioma HIV infectious disease lung adenocarcinoma benign urinary system neoplasm maturity-onset diabetes of the young cribriform carcinoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.