6RF8

Cryo-EM structure of the N-terminal DC repeat (NDC) of NDC-NDC chimera (human sequence) bound to 13-protofilament GDP-microtubule

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth N]	SCOP2B Superfamily	Doublecortin (DC)	8032858	3000670	SCOP2B (2022-06-29)
B [auth b]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8034387	3001732	SCOP2B (2022-06-29)
B [auth b]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8034386	3001758	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8034386	3001758	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8034387	3001732	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8034385	3001732	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8034383	3001758	SCOP2B (2022-06-29)
E [auth a]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8034385	3001732	SCOP2B (2022-06-29)
E [auth a]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8034383	3001758	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth N]	DCX	e6rf8N1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: DCX	ECOD (1.6)
B [auth b]	Tubulin_C	e6rf8b1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: Tubulin C-terminal domain-like (From Topology)	T: Tubulin C-terminal domain-like	F: Tubulin_C	ECOD (1.6)
B [auth b]	Tubulin	e6rf8b2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Tubulin nucleotide-binding domain-like	F: Tubulin	ECOD (1.6)
D [auth B]	Tubulin_C	e6rf8B1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: Tubulin C-terminal domain-like (From Topology)	T: Tubulin C-terminal domain-like	F: Tubulin_C	ECOD (1.6)
D [auth B]	Tubulin	e6rf8B2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Tubulin nucleotide-binding domain-like	F: Tubulin	ECOD (1.6)
C [auth A]	Tubulin_C	e6rf8A1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: Tubulin C-terminal domain-like (From Topology)	T: Tubulin C-terminal domain-like	F: Tubulin_C	ECOD (1.6)
C [auth A]	Tubulin	e6rf8A2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Tubulin nucleotide-binding domain-like	F: Tubulin	ECOD (1.6)
E [auth a]	Tubulin_C	e6rf8a1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: Tubulin C-terminal domain-like (From Topology)	T: Tubulin C-terminal domain-like	F: Tubulin_C	ECOD (1.6)
E [auth a]	Tubulin	e6rf8a2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: Tubulin nucleotide-binding domain-like	F: Tubulin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth N]	3.10.20.230	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Doublecortin domain	CATH (utative)
B [auth b]	3.40.50.1440	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Tubulin/FtsZ, GTPase domain	CATH (utative)
B [auth b]	3.30.1330.20	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (utative)
B [auth b]	1.10.287.600	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (utative)
D [auth B]	3.40.50.1440	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Tubulin/FtsZ, GTPase domain	CATH (utative)
D [auth B]	3.30.1330.20	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (utative)
D [auth B]	1.10.287.600	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (utative)
C [auth A]	3.40.50.1440	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Tubulin/FtsZ, GTPase domain	CATH (utative)
C [auth A]	3.30.1330.20	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (utative)
C [auth A]	1.10.287.600	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (utative)
E [auth a]	3.40.50.1440	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Tubulin/FtsZ, GTPase domain	CATH (utative)
E [auth a]	3.30.1330.20	Alpha Beta	2-Layer Sandwich	60s Ribosomal Protein L30	Chain: A	CATH (utative)
E [auth a]	1.10.287.600	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth N]	PF03607	Doublecortin (DCX)	Doublecortin	-	Family
B [auth b], D [auth B]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
B [auth b], D [auth B]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
C [auth A], E [auth a]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
C [auth A], E [auth a]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth N]	Neuronal migration protein doublecortin	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding kinase binding enzyme binding protein kinase binding	developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development sensory organ development eye development animal organ development retina development in camera-type eye visual system development camera-type eye development sensory system development developmental process multicellular organism development multicellular organismal process central nervous system development anatomical structure development nervous system development system development sensory organ development eye development animal organ development retina development in camera-type eye visual system development camera-type eye development sensory system development neuron migration cellular developmental process generation of neurons neurogenesis cell differentiation cellular process cell migration cell motility cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation signal transduction intracellular signal transduction cell communication organelle assembly plasma membrane bounded cell projection organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly cilium assembly microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly	intracellular organelle intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle cytoplasm cytosol protein-containing complex microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber intracellular organelle intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle cellular anatomical entity non-membrane-bounded organelle cytoplasm cytosol protein-containing complex microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex cell projection neuron projection plasma membrane bounded cell projection
B [auth b], D [auth B]	Tubulin beta-2B chain	protein heterodimerization activity protein binding binding protein dimerization activity structural constituent of cytoskeleton structural molecule activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding protein heterodimerization activity protein binding binding protein dimerization activity structural constituent of cytoskeleton structural molecule activity guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle multicellular organismal process axonogenesis regulation of cellular process response to stimulus cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis taxis cellular process cell cycle mitotic cell cycle multicellular organismal process axonogenesis regulation of cellular process response to stimulus cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis taxis regulation of axon guidance cell differentiation anatomical structure development positive regulation of cell projection organization system development developmental process chemotaxis regulation of biological process regulation of cell projection organization response to external stimulus nervous system development generation of neurons regulation of response to stimulus response to chemical regulation of locomotion regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process regulation of response to external stimulus plasma membrane bounded cell projection morphogenesis positive regulation of biological process cell development cell morphogenesis cellular component organization neurogenesis positive regulation of neuron projection development positive regulation of axon guidance cellular component organization or biogenesis locomotion positive regulation of cellular process plasma membrane bounded cell projection organization biological regulation axon guidance axon development regulation of chemotaxis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis neuron projection guidance neuron development regulation of plasma membrane bounded cell projection organization organelle organization microtubule cytoskeleton organization microtubule-based process cytoskeleton organization	intracellular anatomical structure cytoplasm cellular anatomical entity polymeric cytoskeletal fiber intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton non-membrane-bounded organelle
C [auth A], E [auth a]	Tubulin alpha-1B chain	RNA binding double-stranded RNA binding binding organic cyclic compound binding nucleic acid binding structural constituent of cytoskeleton structural molecule activity ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding guanyl nucleotide binding GTP binding nucleotide binding RNA binding double-stranded RNA binding binding organic cyclic compound binding nucleic acid binding structural constituent of cytoskeleton structural molecule activity ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization cellular response to stimulus response to organic substance response to stimulus response to cytokine response to interleukin-4 cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization cellular response to stimulus response to organic substance response to stimulus response to cytokine response to interleukin-4 cellular response to chemical stimulus response to chemical cellular response to cytokine stimulus cellular response to interleukin-4 cellular response to organic substance	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol polymeric cytoskeletal fiber cytoplasmic microtubule intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol polymeric cytoskeletal fiber cytoplasmic microtubule intracellular organelle cytoskeleton organelle intracellular non-membrane-bounded organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth N]	IPR003533	Doublecortin domain	Domain
A [auth N]	IPR049626	DCX/DCDC2-like	Family
A [auth N]	IPR017302	Neuronal migration protein doublecortin, chordates	Family
A [auth N]	IPR036572	Doublecortin domain superfamily	Homologous Superfamily
B [auth b], D [auth B]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
B [auth b], D [auth B]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
B [auth b], D [auth B]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
B [auth b], D [auth B]	IPR017975	Tubulin, conserved site	Conserved Site
B [auth b], D [auth B]	IPR000217	Tubulin	Family
B [auth b], D [auth B]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
B [auth b], D [auth B]	IPR002453	Beta tubulin	Family
B [auth b], D [auth B]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
B [auth b], D [auth B]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
B [auth b], D [auth B]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
C [auth A], E [auth a]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
C [auth A], E [auth a]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
C [auth A], E [auth a]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
C [auth A], E [auth a]	IPR017975	Tubulin, conserved site	Conserved Site
C [auth A], E [auth a]	IPR002452	Alpha tubulin	Family
C [auth A], E [auth a]	IPR000217	Tubulin	Family
C [auth A], E [auth a]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
C [auth A], E [auth a]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
C [auth A], E [auth a]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth N]	Pharos: O43602	subcortical band heterotopia lissencephaly spectrum disorders lissencephaly type 1 due to doublecortin gene mutation Miller-Dieker lissencephaly syndrome oligodendroglioma pituitary cancer arthrogryposis cerebrovascular disorder Classical Lissencephaly intellectual disability lung carcinoma medulloblastoma ovarian cancer primitive neuroectodermal tumor atypical teratoid rhabdoid tumor subcortical band heterotopia lissencephaly spectrum disorders lissencephaly type 1 due to doublecortin gene mutation Miller-Dieker lissencephaly syndrome oligodendroglioma pituitary cancer arthrogryposis cerebrovascular disorder Classical Lissencephaly intellectual disability lung carcinoma medulloblastoma ovarian cancer primitive neuroectodermal tumor atypical teratoid rhabdoid tumor chromosome 17p13.1 deletion syndrome epilepsy invasive ductal breast carcinoma Pick disease progressive supranuclear palsy breast cancer malignant ependymoma