6QI5 | pdb_00006qi5

Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T [auth M]	Anticodon_3	e6qi5M1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Anticodon_3	ECOD (develop294)
S [auth N]	Anticodon_3	e6qi5N1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Anticodon_3	ECOD (develop294)
P [auth Q]	Fungal_lectin	e6qi5Q1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
O [auth R]	Fungal_lectin	e6qi5R1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
N [auth T]	Fungal_lectin	e6qi5T1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
M [auth S]	Anticodon_3	e6qi5S1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Anticodon_3	ECOD (develop294)
L [auth B]	Fungal_lectin	e6qi5B1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
K [auth C]	Fungal_lectin	e6qi5C1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
J [auth D]	Fungal_lectin	e6qi5D1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
I [auth E]	Fungal_lectin	e6qi5E1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
H [auth F]	Fungal_lectin	e6qi5F1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
G	Fungal_lectin	e6qi5G1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
F [auth I]	Fungal_lectin	e6qi5I1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
E [auth H]	Fungal_lectin	e6qi5H1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
D [auth J]	Fungal_lectin	e6qi5J1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
C [auth K]	Anticodon_3	e6qi5K1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Anticodon_3	ECOD (develop294)
B [auth L]	Fungal_lectin	e6qi5L1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)
A	Fungal_lectin	e6qi5A1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Fungal_lectin	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
T [auth M]	PF01686	Adenovirus penton base protein (Adeno_Penton_B)	Adenovirus penton base protein	-	Family
S [auth N]	PF02455	Hexon-associated protein (IIIa) (Hex_IIIa)	Hexon-associated protein (IIIa)	-	Family
Q [auth P], R [auth O]	PF01310	Adenovirus hexon associated protein, protein VIII (Adeno_PVIII)	Adenovirus hexon associated protein, protein VIII	-	Family
M [auth S], N [auth T], O [auth R], P [auth Q]	PF01696	Adenovirus EB1 55K protein / large t-antigen (Adeno_E1B_55K)	Adenovirus EB1 55K protein / large t-antigen	-	Repeat
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	PF01065	Hexon, adenovirus major coat protein, N-terminal domain (Adeno_hexon)	Hexon, adenovirus major coat protein, N-terminal domain	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polype ...	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices [1]. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.	Domain
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	PF03678	Hexon, adenovirus major coat protein, C-terminal domain (Adeno_hexon_C)	Hexon, adenovirus major coat protein, C-terminal domain	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypep ...	Hexon is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer. The 240 copies of the hexon trimer are organised so that 12 lie on each of the 20 facets. The central 9 hexons in a facet are cemented together by 12 copies of polypeptide IX. The penton complex, formed by the peripentonal hexons and base hexon (holding in place a fibre), lie at each of the 12 vertices [1]. The N and C-terminal domains adopt the same PNGase F-like fold although they are significantly different in length.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
T [auth M]	Penton protein	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid
S [auth N]	PIIIa	-	-	viral capsid virion component viral capsid, decoration
Q [auth P], R [auth O]	Pre-hexon-linking protein VIII	hexon binding protein binding binding	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
M [auth S], N [auth T], O [auth R], P [auth Q]	Protein LH3	-	-	-
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	Hexon protein	-	biological process involved in interspecies interaction between organisms microtubule-dependent intracellular transport of viral material microtubule-dependent intracellular transport of viral material towards nucleus intracellular transport of virus viral process viral life cycle transport of virus transport of viral material towards nucleus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=25 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
T [auth M]	IPR002605	Adenovirus penton base protein	Family
S [auth N]	IPR003479	Pre-hexon-linking protein IIIa	Family
S [auth N]	IPR043053	Pre-hexon-linking protein IIIa, N-terminal	Homologous Superfamily
Q [auth P], R [auth O]	IPR000646	Pre-hexon-linking protein VIII	Family
M [auth S], N [auth T], O [auth R], P [auth Q]	IPR002612	Adenovirus large t-antigen, E1B 55kDa protein	Family
M [auth S], N [auth T], O [auth R], P [auth Q]	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR044942	Adenovirus Pll, hexon, subdomain 2	Homologous Superfamily
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016110	Adenovirus Pll, hexon, subdomain 3	Homologous Superfamily
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016107	Adenovirus Pll, hexon, N-terminal	Domain
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016108	Adenovirus Pll, hexon, C-terminal	Domain
A, B [auth L], C [auth K], D [auth J], E [auth H], A, B [auth L], C [auth K], D [auth J], E [auth H], F [auth I], G, H [auth F], I [auth E], J [auth D], K [auth C], L [auth B]	IPR016112	Group II dsDNA virus coat/capsid protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.