6Q1F | pdb_00006q1f

Atomic structure of the Human Herpesvirus 6B Capsid and Capsid-Associated Tegument Complexes

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q], KA [auth R], LA [auth x], MA [auth y], NA [auth z], OA [auth 1], PA [auth 2], QA [auth 3], RA [auth 4]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], FB [auth c], GB [auth d], XA [auth 6], YA [auth W], ZA [auth X]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
SA [auth 5], TA [auth S], UA [auth T], VA [auth U], WA [auth V]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], AA [auth o], BA [auth p], Q [auth e], R [auth f], S [auth g], T [auth h], U [auth i], V [auth j], W [auth k], X [auth l], Y [auth m], Z [auth n]	Large structural phosphoprotein	-	-	-
CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], CA [auth J], DA [auth K], EA [auth L], FA [auth M], GA [auth N], HA [auth O], IA [auth P], JA [auth Q], KA [auth R], LA [auth x], MA [auth y], NA [auth z], OA [auth 1], PA [auth 2], QA [auth 3], RA [auth 4]	Small capsomere-interacting protein	-	-	-
AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], FB [auth c], GB [auth d], XA [auth 6], YA [auth W], ZA [auth X]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
SA [auth 5], TA [auth S], UA [auth T], VA [auth U], WA [auth V]	Triplex capsid protein 1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	IPR000912	Herpesvirus major capsid protein	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth q], K [auth r], L [auth s], M [auth t], N [auth u], O [auth v], P [auth w]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], AB [auth Y], BB [auth Z], CB [auth 7], DB [auth a], EB [auth b], FB [auth c], GB [auth d], XA [auth 6], YA [auth W], ZA [auth X]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.