6P02 | pdb_00006p02

Crystal structure of Mtb aspartate decarboxylase, 6-Chlorine pyrazinoic acid complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	PrgH	e6p02N1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
R	PrgH	e6p02R1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
X	PrgH	e6p02X1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
V	PrgH	e6p02V1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
T	PrgH	e6p02T1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
P	PrgH	e6p02P1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
L	PrgH	e6p02L1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
J	PrgH	e6p02J1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
H	PrgH	e6p02H1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
F	PrgH	e6p02F1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
D	PrgH	e6p02D1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)
B	PrgH	e6p02B1	A: alpha bundles	X: Family A G protein-coupled receptor-like	H: beta-sandwich domain in metalloprotease stcE	T: beta-sandwich domain in metalloprotease stcE	F: PrgH	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
N	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
R	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
X	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
V	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
T	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
P	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
L	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
J	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
H	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
F	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
D	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
B	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF02261	Aspartate decarboxylase (Asp_decarbox)	Aspartate decarboxylase	Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesised initially as a proenzyme wh ...	Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesised initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	Aspartate 1-decarboxylase alpha chain	aspartate 1-decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	pantothenate metabolic process water-soluble vitamin biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process modified amino acid biosynthetic process carboxylic acid metabolic process modified amino acid metabolic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process vitamin metabolic process biosynthetic process pantothenate biosynthetic process pantothenate metabolic process water-soluble vitamin biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process modified amino acid biosynthetic process carboxylic acid metabolic process modified amino acid metabolic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process vitamin metabolic process biosynthetic process pantothenate biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process amino acid metabolic process primary metabolic process alpha-amino acid metabolic process amino acid biosynthetic process alanine biosynthetic process alanine metabolic process alpha-amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery external encapsulating structure cell wall peptidoglycan-based cell wall
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	Aspartate 1-decarboxylase beta chain	aspartate 1-decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	pantothenate metabolic process water-soluble vitamin biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process modified amino acid biosynthetic process carboxylic acid metabolic process modified amino acid metabolic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process vitamin metabolic process biosynthetic process pantothenate biosynthetic process pantothenate metabolic process water-soluble vitamin biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process modified amino acid biosynthetic process carboxylic acid metabolic process modified amino acid metabolic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process vitamin metabolic process biosynthetic process pantothenate biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process amino acid metabolic process primary metabolic process alpha-amino acid metabolic process amino acid biosynthetic process alanine biosynthetic process alanine metabolic process alpha-amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR003190	Aspartate decarboxylase	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR003190	Aspartate decarboxylase	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PYR	RESID: AA0127 PSI-MOD : pyruvic acid (Cys) MOD:00136 , pyruvic acid (Ser) MOD:00807 , pyruvic acid MOD:01154 , pyruvic acid (Tyr) MOD:01661

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.