6P02

Crystal structure of Mtb aspartate decarboxylase, 6-Chlorine pyrazinoic acid complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ADC-like	8074908	3001132	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF02261	e6p02B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
D	PF02261	e6p02D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
F	PF02261	e6p02F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
H	PF02261	e6p02H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
N	PF02261	e6p02N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
P	PF02261	e6p02P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
R	PF02261	e6p02R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
T	PF02261	e6p02T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
V	PF02261	e6p02V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
J	PF02261	e6p02J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
L	PF02261	e6p02L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)
X	PF02261	e6p02X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: PF02261	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
D	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
F	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
H	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
N	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
P	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
R	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
T	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
V	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
J	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
L	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)
X	2.40.40.20	Mainly Beta	Beta Barrel	Barwin-like endoglucanases		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF02261	Aspartate decarboxylase (Asp_decarbox)	Aspartate decarboxylase	Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesised initially as a proenzyme w ...	Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesised initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	Domain
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF02261	Aspartate decarboxylase (Asp_decarbox)	Aspartate decarboxylase	Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesised initially as a proenzyme w ...	Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesised initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	Aspartate 1-decarboxylase beta chain	aspartate 1-decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process small molecule metabolic process amide metabolic process water-soluble vitamin metabolic process pantothenate metabolic process organonitrogen compound metabolic process oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process small molecule metabolic process amide metabolic process water-soluble vitamin metabolic process pantothenate metabolic process organonitrogen compound metabolic process water-soluble vitamin biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process cellular metabolic process carboxylic acid metabolic process amide biosynthetic process vitamin metabolic process cellular modified amino acid metabolic process biosynthetic process cellular modified amino acid biosynthetic process pantothenate biosynthetic process metabolic process cellular process monocarboxylic acid metabolic process amino acid metabolic process alpha-amino acid metabolic process alanine biosynthetic process primary metabolic process amino acid biosynthetic process alanine metabolic process alpha-amino acid biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery external encapsulating structure cell wall peptidoglycan-based cell wall
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	Aspartate 1-decarboxylase alpha chain	aspartate 1-decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process small molecule metabolic process amide metabolic process water-soluble vitamin metabolic process pantothenate metabolic process organonitrogen compound metabolic process oxoacid metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process vitamin biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process organic substance metabolic process organic substance biosynthetic process small molecule metabolic process amide metabolic process water-soluble vitamin metabolic process pantothenate metabolic process organonitrogen compound metabolic process water-soluble vitamin biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process cellular metabolic process carboxylic acid metabolic process amide biosynthetic process vitamin metabolic process cellular modified amino acid metabolic process biosynthetic process cellular modified amino acid biosynthetic process pantothenate biosynthetic process metabolic process cellular process monocarboxylic acid metabolic process amino acid metabolic process alpha-amino acid metabolic process alanine biosynthetic process primary metabolic process amino acid biosynthetic process alanine metabolic process alpha-amino acid biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR003190	Aspartate decarboxylase	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR003190	Aspartate decarboxylase	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PYR	RESID: AA0127 PSI-MOD : pyruvic acid (Cys) MOD:00136 , pyruvic acid (Ser) MOD:00807 , pyruvic acid MOD:01154 , pyruvic acid (Tyr) MOD:01661

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.