6NJM | pdb_00006njm

Architecture and subunit arrangement of native AMPA receptors


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyClaudin-like 8092551 3002606 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
PArsCe6njmP1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
LArsCe6njmL1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
KArsCe6njmK1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
OArsCe6njmO1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
FArsCe6njmF1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
HArsCe6njmH1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
DArsCe6njmD1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
BArsCe6njmB1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
CArsCe6njmC1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)
AArsCe6njmA1 A: beta barrelsX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: ArsCECOD (v294.2)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
L, P
Fab 15F1 VH-CH1 Mus musculus (house mouse) IGHV2-9*02, IGHJ1*01, IGHJ1*02, IGHG1*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202617-0)
K, O
Fab 15F1 L-KAPPA Mus musculus (house mouse) IGKV10-96*01, IGKJ5*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202617-0)
J, N
Fab 5B2 null Mus musculus (house mouse) - - IG FAB-GAMMA-1_KAPPA IMGT (202617-0)
I, M
Fab 5B2 null Mus musculus (house mouse) - - IG FAB-GAMMA-1_KAPPA IMGT (202617-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
L, P
Heavy ChainIGHV2 -glutamate receptor 2SAbDab (2026-05-08)
K, O
Light ChainIGKV10 Kappaglutamate receptor 2SAbDab (2026-05-08)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F, H
PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family
B, D
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
B, D
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A, C
PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A, C
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L, P
15F1 Fab heavy chain---
K, O
15F1 Fab light chain---
J, N
5B2 Fab Heavy Chain---
I, M
5B2 Fab Light Chain---
F, H
Voltage-dependent calcium channel gamma-2 subunit
E, G
A'-C' auxiliary proteins---
B, D
Glutamate receptor 2
A, C
Glutamate receptor 3

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, F
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, F
MemProtMDAnnotated as membrane protein by MemProtMD