6MXW | pdb_00006mxw

Room-temperature structure of hydrogenated Tetdron (isomorph 1)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6mxwh_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
G	d6mxwg_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
F	d6mxwf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
E	d6mxwe_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
D	d6mxwd_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
C	d6mxwc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
B	d6mxwb_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)
A	d6mxwa_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	automated matches	automated matches	(Echinophyllia sp. SC22 ) [TaxId: 301887 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8081039	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	NDK	e6mxwH1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
G	NDK	e6mxwG1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
F	NDK	e6mxwF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
E	NDK	e6mxwE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
D	NDK	e6mxwD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
C	NDK	e6mxwC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
B	NDK	e6mxwB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)
A	NDK	e6mxwA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Photoswitchable protein Tetdron	cation binding ion binding binding metal ion binding small molecule binding identical protein binding protein binding	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000786	Green fluorescent protein, GFP	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F, G, H	GYC	Parent Component: CYS, TYR, GLY RESID: AA0188 PSI-MOD : L-cysteine 5-imidazolinone glycine MOD:00196

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.