6MDN
The 20S supercomplex engaging the SNAP-25 N-terminus (class 2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ADC-like | 8042527 | 3001132 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cdc48 domain 2-like | 8034899 | 3000725 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ADC-like | 8042527 | 3001132 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cdc48 domain 2-like | 8034899 | 3000725 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cdc48 domain 2-like | 8034899 | 3000725 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ADC-like | 8042527 | 3001132 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | ADC-like | 8042527 | 3001132 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Cdc48 domain 2-like | 8034899 | 3000725 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8044318 | 3002019 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | SNARE fusion complex | 8043667 | 3001549 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | SNARE fusion complex | 8043665 | 3001549 | SCOP2B (2022-06-29) |
J [auth K] | SCOP2B Superfamily | TPR-like | 8080089 | 3001345 | SCOP2B (2022-06-29) |
K [auth L] | SCOP2B Superfamily | TPR-like | 8080089 | 3001345 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17862 | e6mdnA3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
A | PF21964 | e6mdnA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21964 | ECOD (1.6) |
A | PF00004 | e6mdnA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
B | PF02359 | e6mdnB6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
B | PF17862 | e6mdnB5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
B | PF21964 | e6mdnB3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21964 | ECOD (1.6) |
B | PF02933 | e6mdnB4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
B | PF00004 | e6mdnB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
C | PF02359 | e6mdnC6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
C | PF17862 | e6mdnC2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
C | PF21964 | e6mdnC5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21964 | ECOD (1.6) |
C | PF02933 | e6mdnC3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
C | PF00004 | e6mdnC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
D | PF02359 | e6mdnD6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
D | PF17862 | e6mdnD2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
D | PF21964 | e6mdnD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21964 | ECOD (1.6) |
D | PF02933 | e6mdnD3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
D | PF00004 | e6mdnD5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
E | PF02359 | e6mdnE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
E | PF17862 | e6mdnE6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
E | PF21964 | e6mdnE4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21964 | ECOD (1.6) |
E | PF02933 | e6mdnE5 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
E | PF00004 | e6mdnE3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F | PF17862 | e6mdnF4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
F | PF21964 | e6mdnF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF21964 | ECOD (1.6) |
F | PF00004 | e6mdnF3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
I [auth J] | PF00957 | e6mdnJ1 | A: extended segments | X: Synaptobrevin (From Topology) | H: Synaptobrevin (From Topology) | T: Synaptobrevin | F: PF00957 | ECOD (1.6) |
J [auth K] | PF14938 | e6mdnK1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF14938 | ECOD (1.6) |
K [auth L] | PF14938 | e6mdnL1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF14938 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
H [auth I] | PF05739 | SNARE domain (SNARE) | SNARE domain | - | Family |
H [auth I] | PF00804 | Syntaxin (Syntaxin) | Syntaxin | Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (Pfam:PF05739), and an N-terminal d ... | Domain |
I [auth J] | PF00957 | Synaptobrevin (Synaptobrevin) | Synaptobrevin | - | Family |