6M5R | pdb_00006m5r

The coordinates of the apo monomeric terminase complex

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.420.320	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C	PF03581	Herpesvirus UL33-like protein (Herpes_UL33)	Herpesvirus UL33-like protein	-	Family
B	PF01366	Herpesvirus processing and transport protein (PRTP)	Herpesvirus processing and transport protein	-	Family
A	PF02500	Probable DNA packing protein, N-terminus (DNA_pack_N)	Probable DNA packing protein, N-terminus	-	Family
A	PF02499	Probable DNA packing protein, C-terminus (DNA_pack_C)	Probable DNA packing protein, C-terminus	This family includes proteins that are probably involved in DNA packing in herpesvirus. This domain is found at the C-terminus of the protein.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Tripartite terminase subunit 2	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
B	Tripartite terminase subunit 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding transition metal ion binding zinc ion binding metal ion binding	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A	Tripartite terminase subunit 3	DNA binding binding nucleic acid binding hydrolase activity catalytic activity	cellular component organization organelle organization chromosome organization cellular process cellular component organization or biogenesis	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR005208	Herpesvirus tripartite terminase subunit 2	Family
B	IPR000501	Tripartite terminase subunit 1	Family
A	IPR033663	Tripartite terminase subunit 3	Family
A	IPR038435	Probable DNA packing protein, C-terminal domain superfamily	Homologous Superfamily
A	IPR003498	Probable DNA packing protein, C-terminal	Domain
A	IPR003499	Probable DNA packing protein, N-terminal	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.