6LOS | pdb_00006los

Crystal structure of mouse PEDF in complex with heterotrimeric collagen model peptide.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Serpins	8098979	4002658	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Serpins	8098980	3001563	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Serpin	e6losA1	A: a+b complex topology	X: Serpins (From Topology)	H: Serpins (From Topology)	T: Serpins	F: Serpin	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00079	Serpin (serine protease inhibitor) (Serpin)	Serpin (serine protease inhibitor)	Structure is a multi-domain fold containing a bundle of helices and a beta sandwich.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Pigment epithelium-derived factor	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	response to peptide response to stimulus response to chemical multicellular organismal process regulation of cellular process regulation of developmental process prostate gland development regulation of reproductive process reproductive process negative regulation of biological process gland development developmental process involved in reproduction multicellular organism development regulation of epithelial cell proliferation involved in prostate gland development response to peptide response to stimulus response to chemical multicellular organismal process regulation of cellular process regulation of developmental process prostate gland development regulation of reproductive process reproductive process negative regulation of biological process gland development developmental process involved in reproduction multicellular organism development regulation of epithelial cell proliferation involved in prostate gland development negative regulation of cellular process anatomical structure development reproductive structure development regulation of multicellular organismal process epithelial cell proliferation system development developmental process negative regulation of cell population proliferation regulation of biological process cell population proliferation reproductive system development negative regulation of developmental process biological regulation animal organ development epithelial cell proliferation involved in prostate gland development urogenital system development negative regulation of epithelial cell proliferation involved in prostate gland development negative regulation of reproductive process regulation of cell population proliferation cellular process regulation of epithelial cell proliferation negative regulation of multicellular organismal process negative regulation of epithelial cell proliferation sensory organ development eye development retina development in camera-type eye visual system development camera-type eye development sensory system development cellular response to stimulus homeostatic process response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus response to lipid response to retinoic acid cellular response to retinoic acid cellular response to lipid cellular response to metal ion response to cobalt ion response to metal ion cellular response to cobalt ion response to ketone cellular response to endogenous stimulus response to hormone response to steroid hormone cellular response to ketone cellular response to steroid hormone stimulus cellular response to hormone stimulus response to endogenous stimulus cellular response to dexamethasone stimulus response to glucocorticoid cellular response to glucocorticoid stimulus cellular response to corticosteroid stimulus response to corticosteroid response to dexamethasone regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis neuron differentiation positive regulation of neuron projection development cell differentiation positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process plasma membrane bounded cell projection organization regulation of cell projection organization nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization behavior system process learning or memory nervous system process short-term memory cognition memory negative regulation of locomotion regulation of cell motility endothelial cell migration negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration regulation of endothelial cell migration negative regulation of cell motility cell migration cell motility locomotion negative regulation of cell migration positive regulation of nervous system development regulation of cell differentiation regulation of neurogenesis regulation of cell development regulation of nervous system development positive regulation of developmental process positive regulation of cell differentiation positive regulation of neurogenesis regulation of multicellular organismal development positive regulation of cell development positive regulation of multicellular organismal process angiogenesis regulation of vasculature development tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of angiogenesis vasculature development circulatory system development negative regulation of vasculature development anatomical structure morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis ovulation cycle rhythmic process multicellular organismal reproductive process regulation of biosynthetic process negative regulation of metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process negative regulation of macromolecule metabolic process kidney development renal system development response to pH response to abiotic stimulus response to acidic pH response to arsenic-containing substance	membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle basement membrane cell periphery membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cellular anatomical structure cytoplasmic vesicle organelle cytoplasm vesicle basement membrane cell periphery extracellular matrix external encapsulating structure somatodendritic compartment axon cell body cell projection neuron projection neuronal cell body axon hillock plasma membrane bounded cell projection extracellular region perinuclear region of cytoplasm extracellular space
B [auth F]	Collagen model peptide, type I, alpha 2	-	-	-
C [auth G]	Collagen model peptide, type I, alpha 1	-	-	-
D [auth H]	Collagen model peptide, type I, alpha 1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR023795	Serpin, conserved site	Conserved Site
A	IPR000215	Serpin family	Family
A	IPR036186	Serpin superfamily	Homologous Superfamily
A	IPR023796	Serpin domain	Domain
A	IPR042178	Serpin superfamily, domain 1	Homologous Superfamily
A	IPR042185	Serpin superfamily, domain 2	Homologous Superfamily
A	IPR033832	Pigment epithelium derived factor, serpin domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth F]	HYP	Parent Component: PRO RESID: AA0030 PSI-MOD : 4-hydroxy-L-proline MOD:00039
C [auth G]	HYP	Parent Component: PRO RESID: AA0030 , AA0030 PSI-MOD : 4-hydroxy-L-proline MOD:00039 , 4-hydroxy-L-proline MOD:00039
D [auth H]	HYP	Parent Component: PRO RESID: AA0030 , AA0030 , AA0030 PSI-MOD : 4-hydroxy-L-proline MOD:00039 , 4-hydroxy-L-proline MOD:00039 , 4-hydroxy-L-proline MOD:00039

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.