6LNP
Crystal structure of citrate Biosensor
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Sensory domain-like | 8034632 | 3001802 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | GFP-like | 8096046 | 3000576 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Sensory domain-like | 8034632 | 3001802 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | GFP-like | 8096046 | 3000576 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | GFP | e6lnpB1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
A [auth B] | sCache_3_2 | e6lnpB2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: sCache_3_2 | ECOD (1.6) |
B [auth D] | GFP | e6lnpD1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
B [auth D] | sCache_3_2 | e6lnpD2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: sCache_3_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (utative) |
A [auth B] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (utative) |
B [auth D] | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (utative) |
B [auth D] | 3.30.450.20 | Alpha Beta | 2-Layer Sandwich | Beta-Lactamase | PAS domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth D] | PF01353 | Green fluorescent protein (GFP) | Green fluorescent protein | - | Domain |
A [auth B], B [auth D] | PF17203 | Single cache domain 3 (sCache_3_2) | Single cache domain 3 | This domain is associated to sensor histidine kinases and recognises citrate and TCA cycle intermediates, Ag(II), Zn(II), Mg(II) (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth D] | IPR000786 | Green fluorescent protein, GFP | Family |
A [auth B], B [auth D] | IPR011584 | Green fluorescent protein-related | Family |
A [auth B], B [auth D] | IPR009017 | Green fluorescent protein | Homologous Superfamily |
A [auth B], B [auth D] | IPR035965 | PAS domain superfamily | Homologous Superfamily |
A [auth B], B [auth D] | IPR005467 | Histidine kinase domain | Domain |
A [auth B], B [auth D] | IPR000014 | PAS domain | Domain |
A [auth B], B [auth D] | IPR004358 | Signal transduction histidine kinase-related protein, C-terminal | Domain |
A [auth B], B [auth D] | IPR003594 | Histidine kinase/HSP90-like ATPase | Domain |
A [auth B], B [auth D] | IPR029151 | Periplasmic sensor-like domain superfamily | Homologous Superfamily |
A [auth B], B [auth D] | IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | Homologous Superfamily |
A [auth B], B [auth D] | IPR033463 | Single cache domain 3 | Domain |
A [auth B], B [auth D] | IPR016120 | Signal transduction histidine kinase, sporulation regulator SpoOB | Homologous Superfamily |