6LDP | pdb_00006ldp

Structure of CDK5R1-bound FEM1C

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e6ldpB1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Metallophos_2	F:	ECOD (20:10:01)
A		e6ldpA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Metallophos_2	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein fem-1 homolog C,Peptide from Cyclin-dependent kinase 5 activator 1	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding tubulin binding alpha-tubulin binding cell adhesion molecule binding cadherin binding kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding tubulin binding alpha-tubulin binding cell adhesion molecule binding cadherin binding catalytic activity, acting on a protein protein kinase activity phosphotransferase activity, alcohol group as acceptor enzyme regulator activity protein serine/threonine kinase activator activity kinase activator activity enzyme activator activity molecular function activator activity molecular function regulator activity protein kinase activator activity protein kinase regulator activity kinase regulator activity cation binding ion binding calcium ion binding metal ion binding small molecule binding enzyme binding protease binding cyclin-dependent protein serine/threonine kinase activator activity cyclin-dependent protein kinase regulator activity cyclin-dependent protein serine/threonine kinase regulator activity ionotropic glutamate receptor binding signaling receptor binding glutamate receptor binding kinase binding protein kinase binding beta-tubulin binding ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development cellular developmental process forebrain development glial cell migration telencephalon glial cell migration developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development cellular developmental process forebrain development glial cell migration telencephalon glial cell migration cerebral cortex development neurogenesis telencephalon cell migration forebrain cell migration gliogenesis cell differentiation cell migration cell motility layer formation in cerebral cortex cerebral cortex cell migration cerebral cortex radially oriented cell migration pallium development anatomical structure morphogenesis anatomical structure formation involved in morphogenesis cellular process cerebral cortex radial glia-guided migration telencephalon development regulation of biological process catabolic process regulation of cellular process macroautophagy autophagy biological regulation regulation of catabolic process regulation of autophagy regulation of macroautophagy metabolic process process utilizing autophagic mechanism regulation of metabolic process cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell surface receptor protein tyrosine kinase signaling pathway cell communication signal transduction enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway neuron apoptotic process positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process positive regulation of neuron apoptotic process programmed cell death positive regulation of cellular process regulation of neuron apoptotic process protein phosphorylation phosphorylation primary metabolic process macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process peptidyl-threonine modification protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process peptidyl-threonine phosphorylation cerebellum development metencephalon development hindbrain development cell adhesion cell-cell adhesion neuron cell-cell adhesion peptidyl-serine modification peptidyl-serine phosphorylation positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization positive regulation of cellular component organization microtubule cytoskeleton organization cellular component organization cellular component biogenesis regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly cellular component assembly microtubule polymerization or depolymerization positive regulation of protein polymerization protein-containing complex assembly cellular component organization or biogenesis protein polymerization positive regulation of microtubule polymerization or depolymerization protein-containing complex organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of microtubule-based process microtubule polymerization positive regulation of supramolecular fiber organization regulation of cellular component biogenesis regulation of organelle organization organelle organization positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization cytoskeleton organization regulation of microtubule cytoskeleton organization neuron recognition cell projection organization cell development neuron projection development neuron projection fasciculation neuron differentiation axonal fasciculation cell recognition plasma membrane bounded cell projection organization axon development generation of neurons neuron development G1 to G0 transition involved in cell differentiation cell cycle G1 to G0 transition cell cycle process regulation of protein modification process regulation of catalytic activity regulation of protein phosphorylation regulation of transferase activity regulation of primary metabolic process regulation of cyclin-dependent protein serine/threonine kinase activity regulation of protein metabolic process regulation of protein kinase activity regulation of macromolecule metabolic process regulation of molecular function regulation of kinase activity regulation of protein serine/threonine kinase activity regulation of phosphorylation regulation of phosphorus metabolic process regulation of localization cellular localization establishment of protein localization regulation of protein localization protein targeting positive regulation of establishment of protein localization localization regulation of protein targeting to membrane intracellular protein localization establishment of protein localization to membrane regulation of establishment of protein localization localization within membrane establishment of localization protein targeting to membrane regulation of cellular localization regulation of protein targeting macromolecule localization positive regulation of protein targeting to membrane negative regulation of biological process RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription negative regulation of metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process hippocampus development limbic system development cell projection morphogenesis neuron projection morphogenesis regulation of synapse structure or activity synapse organization regulation of biological quality dendritic spine morphogenesis dendritic spine development postsynapse organization dendritic spine organization regulation of cell projection organization regulation of postsynapse organization regulation of neuron projection development regulation of developmental process plasma membrane bounded cell projection morphogenesis cell morphogenesis dendrite development regulation of anatomical structure morphogenesis dendrite morphogenesis cell morphogenesis involved in neuron differentiation regulation of synapse organization cell junction organization regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization superior olivary nucleus development pons development hindbrain maturation central nervous system maturation pons maturation developmental maturation superior olivary nucleus maturation anatomical structure maturation neural nucleus development regulation of actin filament-based process actin cytoskeleton organization regulation of actin cytoskeleton organization actin filament-based process regulation of cell differentiation regulation of neuron differentiation rhythmic process axonogenesis axon guidance neuron projection guidance ligand-gated ion channel signaling pathway ionotropic glutamate receptor signaling pathway glutamate receptor signaling pathway neuron migration cellular response to nitrogen compound synaptic signaling cellular response to acetylcholine response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cellular response to chemical stimulus G protein-coupled acetylcholine receptor signaling pathway response to chemical response to acetylcholine G protein-coupled receptor signaling pathway ubiquitin-dependent protein catabolic process via the C-end degron rule pathway proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein ubiquitination post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal	intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber supramolecular polymer supramolecular complex somatodendritic compartment cell body perikaryon intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber supramolecular polymer supramolecular complex somatodendritic compartment cell body perikaryon neuronal cell body protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex serine/threonine protein kinase complex cyclin-dependent protein kinase holoenzyme complex transferase complex membrane cytosol cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection neuromuscular junction synapse cell junction neuron spine dendritic spine postsynapse perinuclear region of cytoplasm axon protein kinase 5 complex cell periphery plasma membrane growth cone distal axon site of polarized growth membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen postsynaptic density neuron to neuron synapse postsynaptic specialization asymmetric synapse ubiquitin ligase complex intracellular protein-containing complex cullin-RING ubiquitin ligase complex Cul2-RING ubiquitin ligase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004944	Cyclin-dependent kinase 5 activator	Family
A, B	IPR036915	Cyclin-like superfamily	Homologous Superfamily
A, B	IPR002110	Ankyrin repeat	Repeat
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q96JP0	Nerve Degeneration brain disease pituitary cancer schizophrenia astrocytic tumor atypical teratoid rhabdoid tumor cutaneous lupus erythematosus intellectual disability malignant ependymoma osteosarcoma psoriasis Sjogren syndrome atopic eczema esophageal adenocarcinoma lung cancer Nerve Degeneration brain disease pituitary cancer schizophrenia astrocytic tumor atypical teratoid rhabdoid tumor cutaneous lupus erythematosus intellectual disability malignant ependymoma osteosarcoma psoriasis Sjogren syndrome atopic eczema esophageal adenocarcinoma lung cancer malignant glioma non-small cell lung carcinoma pilocytic astrocytoma sarcoidosis tuberculosis attention deficit hyperactivity disorder, inattentive type glioblastoma malignant colon neoplasm medulloblastoma oligodendroglioma atypical teratoid rhabdoid tumor large cell medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia glioblastoma lung cancer pancreatic intraductal papillary-mucinous carcinoma spina bifida invasive ductal breast carcinoma Malignant neoplasm of breast pancreatic intraductal papillary-mucinous neoplasm tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.