Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth I]SCOP2B SuperfamilyHlyD C-terminal domain-like8092210 3002572 SCOP2B (2022-06-29)
A [auth I]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
A [auth I]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
A [auth I]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
A [auth I]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
B [auth J]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
B [auth J]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
B [auth J]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
B [auth J]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
B [auth J]SCOP2B SuperfamilyHlyD C-terminal domain-like8092210 3002572 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilyHlyD C-terminal domain-like8092210 3002572 SCOP2B (2022-06-29)
C [auth K]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyHlyD C-terminal domain-like8092210 3002572 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
D [auth L]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyHlyD C-terminal domain-like8092210 3002572 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
E [auth M]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilyHlyD C-terminal domain-like8092210 3002572 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilySingle hybrid motif8055550 3001880 SCOP2B (2022-06-29)
F [auth N]SCOP2B SuperfamilyHlyD beta-barrel domain-like8041312 3002000 SCOP2B (2022-06-29)
G [auth A]SCOP2B SuperfamilyOuter membrane efflux proteins (OEP)8043654 3000246 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilyOuter membrane efflux proteins (OEP)8043654 3000246 SCOP2B (2022-06-29)
I [auth C]SCOP2B SuperfamilyOuter membrane efflux proteins (OEP)8043654 3000246 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth I]F_UNCLASSIFIEDe6iolI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
A [auth I]PF00529e6iolI2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00529ECOD (1.6)
A [auth I]F_UNCLASSIFIEDe6iolI4 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: F_UNCLASSIFIEDECOD (1.6)
A [auth I]F_UNCLASSIFIEDe6iolI3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: F_UNCLASSIFIEDECOD (1.6)
B [auth J]F_UNCLASSIFIEDe6iolJ4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
B [auth J]PF00529e6iolJ3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00529ECOD (1.6)
B [auth J]F_UNCLASSIFIEDe6iolJ1 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: F_UNCLASSIFIEDECOD (1.6)
B [auth J]F_UNCLASSIFIEDe6iolJ2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: F_UNCLASSIFIEDECOD (1.6)
C [auth K]F_UNCLASSIFIEDe6iolK4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
C [auth K]PF00529e6iolK3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00529ECOD (1.6)
C [auth K]F_UNCLASSIFIEDe6iolK1 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: F_UNCLASSIFIEDECOD (1.6)
C [auth K]F_UNCLASSIFIEDe6iolK2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: F_UNCLASSIFIEDECOD (1.6)
D [auth L]F_UNCLASSIFIEDe6iolL3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
D [auth L]PF00529e6iolL2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00529ECOD (1.6)
D [auth L]F_UNCLASSIFIEDe6iolL1 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: F_UNCLASSIFIEDECOD (1.6)
D [auth L]F_UNCLASSIFIEDe6iolL4 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: F_UNCLASSIFIEDECOD (1.6)
E [auth M]F_UNCLASSIFIEDe6iolM4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
E [auth M]PF00529e6iolM2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00529ECOD (1.6)
E [auth M]F_UNCLASSIFIEDe6iolM3 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: F_UNCLASSIFIEDECOD (1.6)
E [auth M]F_UNCLASSIFIEDe6iolM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: F_UNCLASSIFIEDECOD (1.6)
F [auth N]F_UNCLASSIFIEDe6iolN2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
F [auth N]PF00529e6iolN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00529ECOD (1.6)
F [auth N]F_UNCLASSIFIEDe6iolN3 A: alpha bundlesX: helical hairpin of HlyD-like secretion proteins (From Topology)H: helical hairpin of HlyD-like secretion proteins (From Topology)T: helical hairpin of HlyD-like secretion proteinsF: F_UNCLASSIFIEDECOD (1.6)
F [auth N]F_UNCLASSIFIEDe6iolN4 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: F_UNCLASSIFIEDECOD (1.6)
G [auth A]PF02321e6iolA1 A: a+b duplicates or obligate multimersX: Outer membrane efflux proteins (OEP) (From Topology)H: Outer membrane efflux proteins (OEP) (From Topology)T: Outer membrane efflux proteins (OEP)F: PF02321ECOD (1.6)
H [auth B]PF02321e6iolB1 A: a+b duplicates or obligate multimersX: Outer membrane efflux proteins (OEP) (From Topology)H: Outer membrane efflux proteins (OEP) (From Topology)T: Outer membrane efflux proteins (OEP)F: PF02321ECOD (1.6)
I [auth C]PF02321e6iolC1 A: a+b duplicates or obligate multimersX: Outer membrane efflux proteins (OEP) (From Topology)H: Outer membrane efflux proteins (OEP) (From Topology)T: Outer membrane efflux proteins (OEP)F: PF02321ECOD (1.6)
J [auth F]PF00873e6iolF5 A: alpha bundlesX: Multidrug efflux transporter AcrB transmembrane domain (From Topology)H: Multidrug efflux transporter AcrB transmembrane domain (From Topology)T: Multidrug efflux transporter AcrB transmembrane domainF: PF00873ECOD (1.6)
J [auth F]PF00873e6iolF4 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB pore domainF: PF00873ECOD (1.6)
J [auth F]PF00873e6iolF8 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB TolC docking domainF: PF00873ECOD (1.6)
K [auth G]PF00873e6iolG7 A: alpha bundlesX: Multidrug efflux transporter AcrB transmembrane domain (From Topology)H: Multidrug efflux transporter AcrB transmembrane domain (From Topology)T: Multidrug efflux transporter AcrB transmembrane domainF: PF00873ECOD (1.6)
K [auth G]PF00873e6iolG6 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB pore domainF: PF00873ECOD (1.6)
K [auth G]PF00873e6iolG8 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB TolC docking domainF: PF00873ECOD (1.6)
L [auth E]PF00873e6iolE7 A: alpha bundlesX: Multidrug efflux transporter AcrB transmembrane domain (From Topology)H: Multidrug efflux transporter AcrB transmembrane domain (From Topology)T: Multidrug efflux transporter AcrB transmembrane domainF: PF00873ECOD (1.6)
L [auth E]PF00873e6iolE6 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB pore domainF: PF00873ECOD (1.6)
L [auth E]PF00873e6iolE1 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin domains in multidrug efflux transporterT: Multidrug efflux transporter AcrB TolC docking domainF: PF00873ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
ARO:3000377MexAMexA is the membrane fusion protein of the MexAB-OprM multidrug efflux complex.CARD (3.2.9)
G [auth A],
H [auth B],
I [auth C]
ARO:3000379OprMOprM is an outer membrane factor protein found in Pseudomonas aeruginosa and Burkholderia vietnamiensis. It is part of the MexAB-OprM, MexVW-OprM, MexXY-OprM and the AmrAB-OprM complex.CARD (3.2.9)
J [auth F],
K [auth G],
L [auth E]
ARO:3000378MexBMexB is the inner membrane multidrug exporter of the efflux complex MexAB-OprM.CARD (3.2.9)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penemantibiotic effluxCARD (3.2.9)
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penemantibiotic effluxCARD (3.2.9)
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penemantibiotic effluxCARD (3.2.9)
G [auth A],
H [auth B],
I [auth C]
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, aminoglycoside antibiotic, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penem, disinfecting agents and antisepticsantibiotic effluxCARD (3.2.9)
G [auth A],
H [auth B],
I [auth C]
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, aminoglycoside antibiotic, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penem, disinfecting agents and antisepticsantibiotic effluxCARD (3.2.9)
G [auth A],
H [auth B],
I [auth C]
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, aminoglycoside antibiotic, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penem, disinfecting agents and antisepticsantibiotic effluxCARD (3.2.9)
J [auth F],
K [auth G],
L [auth E]
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penemantibiotic effluxCARD (3.2.9)
J [auth F],
K [auth G],
L [auth E]
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penemantibiotic effluxCARD (3.2.9)
J [auth F],
K [auth G],
L [auth E]
ARO:0010004resistance-nodulation-cell division (RND) antibiotic efflux pumpmacrolide antibiotic, fluoroquinolone antibiotic, monobactam, carbapenem, cephalosporin, cephamycin, penam, tetracycline antibiotic, peptide antibiotic, aminocoumarin antibiotic, diaminopyrimidine antibiotic, sulfonamide antibiotic, phenicol antibiotic, penemantibiotic effluxCARD (3.2.9)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00529Cation efflux system protein CusB domain 1 (CusB_dom_1)Cation efflux system protein CusB domain 1- Family
PF16576Barrel-sandwich domain of CusB or HlyD membrane-fusion (HlyD_D23)Barrel-sandwich domain of CusB or HlyD membrane-fusionHlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole ...HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.
Domain
G [auth A],
H [auth B],
I [auth C]
PF02321Outer membrane efflux protein (OEP)Outer membrane efflux protein- Family
J [auth F],
K [auth G],
L [auth E]
PF00873AcrB/AcrD/AcrF family (ACR_tran)AcrB/AcrD/AcrF family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Multidrug resistance protein MexA
G [auth A],
H [auth B],
I [auth C]
Outer membrane protein OprM
J [auth F],
K [auth G],
L [auth E]
Multidrug resistance protein MexB