6HWH
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth V] | SCOP2 Family | Cytochrome c oxidase subunit I-like | 8097007 | 4001989 | SCOP2 (2022-06-29) |
J [auth V] | SCOP2 Superfamily | Cytochrome c oxidase subunit I-like | 8097008 | 3000653 | SCOP2 (2022-06-29) |
W [auth Q] | SCOP2B Superfamily | Cytochrome c oxidase subunit I-like | 8097008 | 3000653 | SCOP2B (2022-06-29) |
L [auth Z] | SCOP2B Superfamily | Cytochrome c oxidase subunit III-like | 8075786 | 3000671 | SCOP2B (2022-06-29) |
Y [auth W] | SCOP2 Family | Cytochrome c oxidase subunit III-like | 8075785 | 4002000 | SCOP2 (2022-06-29) |
Y [auth W] | SCOP2 Superfamily | Cytochrome c oxidase subunit III-like | 8075786 | 3000671 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G [auth P] | COX2 | e6hwhP1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: COX2 | ECOD (1.6) |
G [auth P] | COX2_TM_1 | e6hwhP2 | A: extended segments | X: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | T: Cytochrome c oxidase subunit II-like, transmembrane region | F: COX2_TM_1 | ECOD (1.6) |
T [auth L] | COX2 | e6hwhL2 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: COX2 | ECOD (1.6) |
T [auth L] | COX2_TM_1 | e6hwhL1 | A: extended segments | X: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology) | T: Cytochrome c oxidase subunit II-like, transmembrane region | F: COX2_TM_1 | ECOD (1.6) |
I [auth T] | TPM_phosphatase | e6hwhT1 | A: a+b three layers | X: thylakoid acid phosphatase domain-related (From Topology) | H: thylakoid acid phosphatase domain-related (From Topology) | T: thylakoid acid phosphatase domain-related | F: TPM_phosphatase | ECOD (1.6) |
V [auth O] | TPM_phosphatase | e6hwhO1 | A: a+b three layers | X: thylakoid acid phosphatase domain-related (From Topology) | H: thylakoid acid phosphatase domain-related (From Topology) | T: thylakoid acid phosphatase domain-related | F: TPM_phosphatase | ECOD (1.6) |
J [auth V] | COX1 | e6hwhV1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: COX1 | ECOD (1.6) |
W [auth Q] | COX1 | e6hwhQ1 | A: alpha superhelices | X: Cytochrome c oxidase subunit I-like | H: Cytochrome c oxidase subunit I-like (From Topology) | T: Cytochrome c oxidase subunit I-like | F: COX1 | ECOD (1.6) |
L [auth Z] | COX3 | e6hwhZ1 | A: alpha bundles | X: Cytochrome c oxidase subunit III-like (From Topology) | H: Cytochrome c oxidase subunit III-like (From Topology) | T: Cytochrome c oxidase subunit III-like | F: COX3 | ECOD (1.6) |
Y [auth W] | COX3 | e6hwhW1 | A: alpha bundles | X: Cytochrome c oxidase subunit III-like (From Topology) | H: Cytochrome c oxidase subunit III-like (From Topology) | T: Cytochrome c oxidase subunit III-like | F: COX3 | ECOD (1.6) |
AA [auth i] | Cytochrome_CBB3 | e6hwhi2 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
BA [auth j] | Cytochrome_CBB3 | e6hwhj2 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, N [auth B] | PF13631 | Cytochrome b(N-terminal)/b6/petB (Cytochrom_B_N_2) | Cytochrome b(N-terminal)/b6/petB | - | Domain |
A, N [auth B] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
I [auth T], V [auth O] | PF17174 | Domain of unknown function (DUF5130) (DUF5130) | Domain of unknown function (DUF5130) | - | Family |
J [auth V], W [auth Q] | PF00115 | Cytochrome C and Quinol oxidase polypeptide I (COX1) | Cytochrome C and Quinol oxidase polypeptide I | - | Family |
K [auth X], X [auth S] | PF12270 | Cytochrome c oxidase subunit IV (Cyt_c_ox_IV) | Cytochrome c oxidase subunit IV | - | Family |
M [auth b], Z [auth Y] | PF13631 | Cytochrome b(N-terminal)/b6/petB (Cytochrom_B_N_2) | Cytochrome b(N-terminal)/b6/petB | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex IV (cytochrome c oxidase) | Respiratory supercomplexes III-IV |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Electron Transport Chain Supercomplexes (Respirasome) | Respiratory supercomplex CIII2CIV2 |