6GY5 | pdb_00006gy5

Crystal structure of the kelch domain of human KLHL20 in complex with DAPK1 peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Kelch motif	8084979	3000448	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Kelch_1	e6gy5A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Kelch_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.120.10.80	Mainly Beta	6 Propeller	Neuraminidase	Kelch-type beta propeller	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01344	Kelch motif (Kelch_1)	Kelch motif	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth U]	Death-associated protein kinase 1	protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity calcium/calmodulin-dependent protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups syntaxin-1 binding protein binding binding SNARE binding syntaxin binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity calcium/calmodulin-dependent protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups syntaxin-1 binding protein binding binding SNARE binding syntaxin binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine kinase activity adenyl ribonucleotide binding adenyl nucleotide binding ATP binding calmodulin binding identical protein binding	response to tumor cell response to stimulus defense response response to stress defense response to tumor cell response to biotic stimulus regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process response to tumor cell response to stimulus defense response response to stress defense response to tumor cell response to biotic stimulus regulation of cellular process negative regulation of biological process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cellular response to stimulus cellular response to oxidative stress response to oxygen-containing compound cellular response to chemical stress cellular response to oxygen-containing compound response to oxidative stress cellular response to chemical stimulus cellular response to stress response to chemical response to hydroperoxide cellular response to hydroperoxide negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of localization signaling transport regulation of signaling receptor activity regulation of transmembrane transporter activity regulation of signal transduction cell communication localization signal transduction regulation of NMDA receptor activity regulation of signaling regulation of transport establishment of localization transmembrane transport regulation of molecular function regulation of transmembrane transport regulation of response to stimulus regulation of neurotransmitter receptor activity regulation of cell communication positive regulation of programmed cell death positive regulation of biological process positive regulation of apoptotic process positive regulation of cellular process extrinsic apoptotic signaling pathway via death domain receptors cell surface receptor signaling pathway extrinsic apoptotic signaling pathway apoptotic signaling pathway protein phosphorylation protein autophosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein modification process phosphorus metabolic process biological process involved in interspecies interaction between organisms immune response response to other organism response to type II interferon response to cytokine defense response to symbiont response to external stimulus cellular response to type II interferon response to peptide immune system process defense response to other organism innate immune response cellular response to cytokine stimulus response to external biotic stimulus autophagic cell death regulation of autophagic cell death positive regulation of autophagic cell death regulation of response to biotic stimulus regulation of response to tumor cell catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism intracellular signal transduction positive regulation of autophagy positive regulation of catabolic process positive regulation of metabolic process	protein kinase complex transferase complex, transferring phosphorus-containing groups DAPK1-calmodulin complex protein-containing complex catalytic complex serine/threonine protein kinase complex transferase complex intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle protein kinase complex transferase complex, transferring phosphorus-containing groups DAPK1-calmodulin complex protein-containing complex catalytic complex serine/threonine protein kinase complex transferase complex intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cell periphery plasma membrane membrane cytoplasm synapse cell junction glutamatergic synapse postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization asymmetric synapse membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A	Kelch-like protein 20	protein binding binding interferon binding cytokine binding type II interferon binding ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity cytoskeletal protein binding actin binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein protein binding binding interferon binding cytokine binding type II interferon binding ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity cytoskeletal protein binding actin binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity	regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death localization regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process cellular process apoptotic process programmed cell death localization establishment of protein localization nitrogen compound transport protein transport transport macromolecule localization intracellular protein localization establishment of localization primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization protein polyubiquitination protein K33-linked ubiquitination response to peptide response to interferon-alpha response to stimulus response to chemical response to cytokine cellular localization Golgi to endosome transport post-Golgi vesicle-mediated transport intracellular transport vesicle-mediated transport cytosolic transport establishment of localization in cell Golgi vesicle transport	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection membrane-bounded organelle Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system trans-Golgi network perinuclear region of cytoplasm axon cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex nucleus membrane-enclosed lumen intracellular organelle lumen nuclear body nucleoplasm organelle lumen PML body nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth U]	IPR017441	Protein kinase, ATP binding site	Binding Site
B [auth U]	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B [auth U]	IPR000719	Protein kinase domain	Domain
B [auth U]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth U]	IPR002110	Ankyrin repeat	Repeat
B [auth U]	IPR011029	Death-like domain superfamily	Homologous Superfamily
B [auth U]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B [auth U]	IPR000488	Death domain	Domain
B [auth U]	IPR020676	Death-associated protein kinase 1, catalytic domain	Domain
B [auth U]	IPR020859	Roc domain	Domain
B [auth U]	IPR008271	Serine/threonine-protein kinase, active site	Active Site
A	IPR000210	BTB/POZ domain	Domain
A	IPR006652	Kelch repeat type 1	Repeat
A	IPR011705	BTB/Kelch-associated	Domain
A	IPR015915	Kelch-type beta-propeller	Homologous Superfamily
A	IPR017096	BTB-kelch protein	Family
A	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth U]	Pharos: P53355	acute myeloid leukemia non-small cell lung carcinoma renal cell carcinoma myelodysplastic syndrome transitional cell carcinoma peripheral nervous system disease juvenile idiopathic arthritis adenocarcinoma adenoid cystic carcinoma peripheral neuropathy salivary gland adenoid cystic carcinoma sarcomatoid renal cell carcinoma Neoplasms, Second Primary papillary renal cell carcinoma granular cell carcinoma acute myeloid leukemia non-small cell lung carcinoma renal cell carcinoma myelodysplastic syndrome transitional cell carcinoma peripheral nervous system disease juvenile idiopathic arthritis adenocarcinoma adenoid cystic carcinoma peripheral neuropathy salivary gland adenoid cystic carcinoma sarcomatoid renal cell carcinoma Neoplasms, Second Primary papillary renal cell carcinoma granular cell carcinoma tubular adenocarcinoma chromophobe renal cell carcinoma collecting duct carcinoma cystic fibrosis primary myelofibrosis renal carcinoma large cell medulloblastoma atypical teratoid rhabdoid tumor medulloblastoma chronic obstructive pulmonary disease pancreatic intraductal papillary-mucinous neoplasm cribriform carcinoma glioblastoma invasive ductal breast carcinoma psoriasis lung benign neoplasm malignant ependymoma tuberculosis adrenoleukodystrophy clear cell renal carcinoma oligodendroglioma conjunctival disorder cribriform carcinoma of breast pilocytic astrocytoma respiratory system disease salivary gland cancer lung cancer malignant glioma astrocytic tumor brain cancer ovarian cancer
A	Pharos: Q9Y2M5	Gaucher disease malignant mesothelioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm tuberculosis glioblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia large cell medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.