6GW3 | pdb_00006gw3

Structure of TKS from Cannabis sativa in complex with CoA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6gw3d1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	Hemp (Cannabis sativa ) [TaxId: 3483 ], Hemp (Cannabis sativa ) [TaxId: 3483 ],	SCOPe (2.08)
C	d6gw3c1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	Hemp (Cannabis sativa ) [TaxId: 3483 ],	SCOPe (2.08)
B	d6gw3b1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	Hemp (Cannabis sativa ) [TaxId: 3483 ],	SCOPe (2.08)
A	d6gw3a1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	Hemp (Cannabis sativa ) [TaxId: 3483 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Thiolase-like	8101369	3000122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thiolase-like	8101811	3000122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiolase-like	8101811	3000122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thiolase-like	8101369	3000122	SCOP2B (2022-06-29)
B	SCOP2 Family	Chalcone synthase-like	8101368	4000864	SCOP2 (2022-06-29)
B	SCOP2 Family	Chalcone synthase-like	8101810	4000864	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Thiolase-like	8101369	3000122	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Thiolase-like	8101811	3000122	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Thiolase-like	8101369	3000122	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thiolase-like	8101811	3000122	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	ACP_syn_III_C	e6gw3D1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
D	Chal_sti_synt_N	e6gw3D2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
C	ACP_syn_III_C	e6gw3C1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
C	Chal_sti_synt_N	e6gw3C2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
B	ACP_syn_III_C	e6gw3B2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
B	Chal_sti_synt_N	e6gw3B1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)
A	ACP_syn_III_C	e6gw3A2	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: ACP_syn_III_C	ECOD (1.6)
A	Chal_sti_synt_N	e6gw3A1	A: a/b three-layered sandwiches	X: Thiolase-like (From Topology)	H: Thiolase-like (From Topology)	T: Thiolase-like	F: Chal_sti_synt_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)
C	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF02797	Chalcone and stilbene synthases, C-terminal domain (Chal_sti_synt_C)	Chalcone and stilbene synthases, C-terminal domain	This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain.	Domain
A, B, C	PF02797	Chalcone and stilbene synthases, C-terminal domain (Chal_sti_synt_C)	Chalcone and stilbene synthases, C-terminal domain	This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	3,5,7-trioxododecanoyl-CoA synthase,3,5,7-trioxododecanoyl-CoA synthase	lyase activity catalytic activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity	biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process terpenoid biosynthetic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process cannabinoid biosynthetic process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process terpenoid biosynthetic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process cannabinoid biosynthetic process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process secondary metabolic process	-
A, B, C	3,5,7-trioxododecanoyl-CoA synthase	lyase activity catalytic activity acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity	biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process terpenoid biosynthetic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process cannabinoid biosynthetic process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process primary metabolic process metabolic process cellular process terpenoid biosynthetic process terpenoid metabolic process lipid metabolic process isoprenoid metabolic process cannabinoid biosynthetic process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process secondary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR001099	Chalcone/stilbene synthase, N-terminal	Domain
D	IPR016039	Thiolase-like	Homologous Superfamily
D	IPR012328	Chalcone/stilbene synthase, C-terminal	Domain
D	IPR011141	Polyketide synthase, type III	Family
D	IPR018088	Chalcone/stilbene synthase, active site	Active Site
A, B, C	IPR001099	Chalcone/stilbene synthase, N-terminal	Domain
A, B, C	IPR016039	Thiolase-like	Homologous Superfamily
A, B, C	IPR012328	Chalcone/stilbene synthase, C-terminal	Domain
A, B, C	IPR011141	Polyketide synthase, type III	Family
A, B, C	IPR018088	Chalcone/stilbene synthase, active site	Active Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
D	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267
A, B, C	CSD	Parent Component: CYS RESID: AA0262 , AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267 , L-cysteine sulfinic acid MOD:00267

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.