6EK5 | pdb_00006ek5

Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZC [auth BV]AAA_lid_3e6ek5BV1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
ZB [auth BN]AAA_lid_3e6ek5BN1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
ZA [auth z]AAA_lid_3e6ek5z1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
ZAAA_lid_3e6ek5Z1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
YC [auth BQ]AAA_lid_3e6ek5BQ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
YB [auth BM]AAA_lid_3e6ek5BM1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
YA [auth y]AAA_lid_3e6ek5y1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
YAAA_lid_3e6ek5Y1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
XC [auth BH]AAA_lid_3e6ek5BH1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
XB [auth BL]AAA_lid_3e6ek5BL1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
XA [auth x]AAA_lid_3e6ek5x1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
XAAA_lid_3e6ek5X1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
WC [auth Bw]AAA_lid_3e6ek5Bw1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
WB [auth BK]AAA_lid_3e6ek5BK1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
WA [auth u]AAA_lid_3e6ek5u1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
WAAA_lid_3e6ek5W1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
VC [auth B2]AAA_lid_3e6ek5B21 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
VB [auth Bd]AAA_lid_3e6ek5Bd1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
VA [auth t]AAA_lid_3e6ek5t1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
VAAA_lid_3e6ek5V1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
UC [auth B1]AAA_lid_3e6ek5B11 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
UB [auth Bc]AAA_lid_3e6ek5Bc1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
UA [auth s]AAA_lid_3e6ek5s1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
UAAA_lid_3e6ek5U1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
TC [auth B3]AAA_lid_3e6ek5B31 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
TB [auth Bb]AAA_lid_3e6ek5Bb1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
TA [auth r]AAA_lid_3e6ek5r1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
TAAA_lid_3e6ek5T1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
SC [auth Bz]AAA_lid_3e6ek5Bz1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
SB [auth Ba]AAA_lid_3e6ek5Ba1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
SA [auth q]AAA_lid_3e6ek5q1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
SAAA_lid_3e6ek5S1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
RC [auth By]AAA_lid_3e6ek5By1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
RB [auth BZ]AAA_lid_3e6ek5BZ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
RA [auth p]AAA_lid_3e6ek5p1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
RAAA_lid_3e6ek5R1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
QC [auth Bx]AAA_lid_3e6ek5Bx1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
QB [auth BY]AAA_lid_3e6ek5BY1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
QA [auth o]AAA_lid_3e6ek5o1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
QAAA_lid_3e6ek5Q1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
PC [auth Bu]AAA_lid_3e6ek5Bu1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
PB [auth BX]AAA_lid_3e6ek5BX1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
PA [auth n]AAA_lid_3e6ek5n1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
PAAA_lid_3e6ek5P1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
OC [auth Bt]AAA_lid_3e6ek5Bt1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
OB [auth BU]AAA_lid_3e6ek5BU1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
OA [auth m]AAA_lid_3e6ek5m1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
OAAA_lid_3e6ek5O1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
NC [auth Bs]AAA_lid_3e6ek5Bs1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
NB [auth BT]AAA_lid_3e6ek5BT1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
NA [auth j]AAA_lid_3e6ek5j1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
NAAA_lid_3e6ek5N1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
MC [auth Br]AAA_lid_3e6ek5Br1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
MB [auth BS]AAA_lid_3e6ek5BS1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
MA [auth i]AAA_lid_3e6ek5i1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
MAAA_lid_3e6ek5M1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
LC [auth Bq]AAA_lid_3e6ek5Bq1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
LB [auth BP]AAA_lid_3e6ek5BP1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
LA [auth h]AAA_lid_3e6ek5h1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
LAAA_lid_3e6ek5L1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
KC [auth Bp]AAA_lid_3e6ek5Bp1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
KB [auth BJ]AAA_lid_3e6ek5BJ1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
KA [auth g]AAA_lid_3e6ek5g1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
KAAA_lid_3e6ek5K1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
JC [auth Bo]AAA_lid_3e6ek5Bo1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
JB [auth BG]AAA_lid_3e6ek5BG1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
JA [auth f]AAA_lid_3e6ek5f1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
JAAA_lid_3e6ek5J1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
IC [auth Bn]AAA_lid_3e6ek5Bn1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
IB [auth BF]AAA_lid_3e6ek5BF1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
IA [auth e]AAA_lid_3e6ek5e1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
IAAA_lid_3e6ek5I1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
HC [auth Bm]AAA_lid_3e6ek5Bm1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
HB [auth BE]AAA_lid_3e6ek5BE1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
HA [auth d]AAA_lid_3e6ek5d1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
HAAA_lid_3e6ek5H1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
GC [auth Bj]AAA_lid_3e6ek5Bj1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
GB [auth v]AAA_lid_3e6ek5v1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
GA [auth c]AAA_lid_3e6ek5c1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
GAAA_lid_3e6ek5G1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
FD [auth Bl]AAA_lid_3e6ek5Bl1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
FC [auth Bi]AAA_lid_3e6ek5Bi1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
FB [auth l]AAA_lid_3e6ek5l1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
FA [auth b]AAA_lid_3e6ek5b1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
FAAA_lid_3e6ek5F1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
ED [auth BW]AAA_lid_3e6ek5BW1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
EC [auth Bh]AAA_lid_3e6ek5Bh1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
EB [auth w]AAA_lid_3e6ek5w1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
EA [auth a]AAA_lid_3e6ek5a1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
EAAA_lid_3e6ek5E1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
DD [auth BR]AAA_lid_3e6ek5BR1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
DC [auth Bg]AAA_lid_3e6ek5Bg1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
DB [auth k]AAA_lid_3e6ek5k1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
DA [auth BD]AAA_lid_3e6ek5BD1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
DAAA_lid_3e6ek5D1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
CD [auth BI]AAA_lid_3e6ek5BI1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
CC [auth Bf]AAA_lid_3e6ek5Bf1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
CB [auth 2]AAA_lid_3e6ek521 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
CA [auth BC]AAA_lid_3e6ek5BC1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
CAAA_lid_3e6ek5C1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
BD [auth Bv]AAA_lid_3e6ek5Bv1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
BC [auth Be]AAA_lid_3e6ek5Be1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
BB [auth 1]AAA_lid_3e6ek511 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
BA [auth BB]AAA_lid_3e6ek5BB1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
BAAA_lid_3e6ek5B1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
AD [auth Bk]AAA_lid_3e6ek5Bk1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
AC [auth BO]AAA_lid_3e6ek5BO1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
AB [auth 3]AAA_lid_3e6ek531 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
AA [auth BA]AAA_lid_3e6ek5BA1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: AAA_lid_3ECOD (v295)
ABRF1e6ek5A01 A: alpha arraysX: Ribonuclease H-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: BRF1ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000263Geminivirus AR1/BR1 coat proteinFamily
IPR029053Viral coat protein subunitHomologous Superfamily
IPR000650Geminivirus AR1 coat proteinFamily