6EK5 | pdb_00006ek5

Near-atomic resolution structure of a plant geminivirus determined by electron cryo-microscopy.

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BRF1	e6ek5A01	A: a/b three-layered sandwiches	X: Rossmann-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: BRF1	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	Capsid protein	DNA binding binding nucleic acid binding structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus viral process viral life cycle transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	IPR000263	Geminivirus AR1/BR1 coat protein	Family
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], A, AA [auth BA], AB [auth 3], AC [auth BO], AD [auth Bk], B, BA [auth BB], BB [auth 1], BC [auth Be], BD [auth Bv], C, CA [auth BC], CB [auth 2], CC [auth Bf], CD [auth BI], D, DA [auth BD], DB [auth k], DC [auth Bg], DD [auth BR], E, EA [auth a], EB [auth w], EC [auth Bh], ED [auth BW], F, FA [auth b], FB [auth l], FC [auth Bi], FD [auth Bl], G, GA [auth c], GB [auth v], GC [auth Bj], H, HA [auth d], HB [auth BE], HC [auth Bm], I, IA [auth e], IB [auth BF], IC [auth Bn], J, JA [auth f], JB [auth BG], JC [auth Bo], K, KA [auth g], KB [auth BJ], KC [auth Bp], L, LA [auth h], LB [auth BP], LC [auth Bq], M, MA [auth i], MB [auth BS], MC [auth Br], N, NA [auth j], NB [auth BT], NC [auth Bs], O, OA [auth m], OB [auth BU], OC [auth Bt], P, PA [auth n], PB [auth BX], PC [auth Bu], Q, QA [auth o], QB [auth BY], QC [auth Bx], R, RA [auth p], RB [auth BZ], RC [auth By], S, SA [auth q], SB [auth Ba], SC [auth Bz], T, TA [auth r], TB [auth Bb], TC [auth B3], U, UA [auth s], UB [auth Bc], UC [auth B1], V, VA [auth t], VB [auth Bd], VC [auth B2], W, WA [auth u], WB [auth BK], WC [auth Bw], X, XA [auth x], XB [auth BL], XC [auth BH], Y, YA [auth y], YB [auth BM], YC [auth BQ], Z, ZA [auth z], ZB [auth BN], ZC [auth BV]	IPR000650	Geminivirus AR1 coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.