6EEL | pdb_00006eel

Crystal Structure of Myoferlin C2A with divalent cation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	C2 domain (calcium/lipid-binding domain, calb)	8081493	3000965	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	C2 domain (calcium/lipid-binding domain, calb)	8081493	3000965	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	C2 domain (calcium/lipid-binding domain, calb)	8081493	3000965	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	HH_signal	e6eelC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: HH_signal	ECOD (v294.1)
B	HH_signal	e6eelB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: HH_signal	ECOD (v294.1)
A	tRNA-synt_1e	e6eelA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: beta-helix of amnionless (AMN) extracellular domain	T: beta-helix of amnionless (AMN) extracellular domain	F: tRNA-synt_1e	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (utative)
B	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (utative)
A	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00168	C2 domain (C2)	C2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Myoferlin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phospholipid binding lipid binding	regulation of localization cellular localization regulation of cellular process transport modulation of chemical synaptic transmission signaling cell communication localization synaptic signaling regulation of secretion by cell secretion by cell signal release establishment of localization in cell trans-synaptic signaling regulation of localization cellular localization regulation of cellular process transport modulation of chemical synaptic transmission signaling cell communication localization synaptic signaling regulation of secretion by cell secretion by cell signal release establishment of localization in cell trans-synaptic signaling regulation of biological process regulation of signaling neurotransmitter secretion regulation of transport secretion regulation of neurotransmitter transport biological regulation export from cell cell-cell signaling neurotransmitter transport establishment of localization regulation of secretion chemical synaptic transmission signal release from synapse regulation of trans-synaptic signaling regulation of neurotransmitter secretion anterograde trans-synaptic signaling regulation of cell communication cellular process multicellular organismal process system process muscle contraction muscle system process membrane organization wound healing response to stimulus plasma membrane repair cellular component organization response to stress plasma membrane organization cellular component organization or biogenesis response to wounding endomembrane system organization circulatory system process blood circulation	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle organelle envelope intracellular anatomical structure nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection intracellular organelle organelle envelope intracellular anatomical structure nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle intracellular membraneless organelle centrosome microtubule organizing center cytoskeleton centriolar satellite membraneless organelle microtubule cytoskeleton membrane microdomain cell periphery membrane raft plasma membrane raft plasma membrane plasma membrane region caveola ciliary tip endosome membrane endosome intracellular vesicle late endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane late endosome cytoplasm synapse transport vesicle membrane presynapse synaptic vesicle synaptic vesicle membrane cell junction transport vesicle exocytic vesicle membrane secretory vesicle exocytic vesicle ciliary basal body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR037723	Ferlin, fourth C2 domain	Domain
A, B, C	IPR012560	Ferlin A-domain	Domain
A, B, C	IPR006614	Peroxin/Ferlin domain	Domain
A, B, C	IPR037721	Ferlin family	Family
A, B, C	IPR037724	Ferlin, fifth C2 domain	Domain
A, B, C	IPR037722	Ferlin, third C2 domain	Domain
A, B, C	IPR012968	FerIin domain	Domain
A, B, C	IPR000008	C2 domain	Domain
A, B, C	IPR055072	Ferlin, dsRNA-binding domain-like domain	Domain
A, B, C	IPR012561	Ferlin B-domain	Domain
A, B, C	IPR037725	Ferlin, sixth C2 domain	Domain
A, B, C	IPR032362	Ferlin, C-terminal domain	Domain
A, B, C	IPR035892	C2 domain superfamily	Homologous Superfamily
A, B, C	IPR037726	Ferlin, first C2 domain	Domain
A, B, C	IPR037720	Ferlin, second C2 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q9NZM1	malignant glioma MALT lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer adenoma tuberculosis atypical teratoid rhabdoid tumor chronic kidney disease diabetes mellitus facioscapulohumeral muscular dystrophy limb-girdle muscular dystrophy lung carcinoma malignant mesothelioma myopathy malignant glioma MALT lymphoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm pituitary cancer adenoma tuberculosis atypical teratoid rhabdoid tumor chronic kidney disease diabetes mellitus facioscapulohumeral muscular dystrophy limb-girdle muscular dystrophy lung carcinoma malignant mesothelioma myopathy pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia psoriasis amyotrophic lateral sclerosis ulcerative colitis Becker muscular dystrophy Crohn disease Duchenne muscular dystrophy glioblastoma lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma subependymal giant cell astrocytoma astrocytic tumor breast cancer dermatomyositis Emery-Dreifuss muscular dystrophy juvenile dermatomyositis lung cancer

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C	OPM	Monotopic/peripheral	All beta monotopic/peripheral	C2 domain	C2 domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.