6D7K | pdb_00006d7k

Complex structure of Methane monooxygenase hydroxylase in complex with inhibitory subunit

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G	d6d7kg_	All alpha proteins	Open three-helical up-and-down bundle	Methane monooxygenase hydrolase, gamma subunit	Methane monooxygenase hydrolase, gamma subunit	automated matches	(Methylosinus sporium ) [TaxId: 428 ],	SCOPe (2.08)
C	d6d7kc_	All alpha proteins	Open three-helical up-and-down bundle	Methane monooxygenase hydrolase, gamma subunit	Methane monooxygenase hydrolase, gamma subunit	automated matches	(Methylosinus sporium ) [TaxId: 428 ],	SCOPe (2.08)
E	d6d7ke_	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	automated matches	(Methylosinus sporium ) [TaxId: 428 ],	SCOPe (2.08)
A	d6d7ka_	All alpha proteins	Ferritin-like	Ferritin-like	Ribonucleotide reductase-like	automated matches	(Methylosinus sporium ) [TaxId: 428 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2 Family	Methane monooxygenase hydrolase, gamma subunit	8094436	4000804	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	Methane monooxygenase hydrolase, gamma subunit	8094437	3001468	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	Methane monooxygenase hydrolase, gamma subunit	8094437	3001468	SCOP2B (2022-06-29)
F	SCOP2 Family	Ribonucleotide reductase-like	8099253	4000846	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Ferritin-like	8099254	3001658	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8099254	3001658	SCOP2B (2022-06-29)
E	SCOP2 Family	Ribonucleotide reductase-like	8094322	4000846	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Ferritin-like	8094323	3001658	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8094323	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	UNK_F_TYPE	e6d7kH1	A: a+b two layers	X: Methane monooxygenase hydroxylase, MmoD (From Topology)	H: Methane monooxygenase hydroxylase, MmoD (From Topology)	T: Methane monooxygenase hydroxylase, MmoD	F: UNK_F_TYPE	ECOD (1.6)
D	UNK_F_TYPE	e6d7kD1	A: a+b two layers	X: Methane monooxygenase hydroxylase, MmoD (From Topology)	H: Methane monooxygenase hydroxylase, MmoD (From Topology)	T: Methane monooxygenase hydroxylase, MmoD	F: UNK_F_TYPE	ECOD (1.6)
G	MeMO_Hyd_G	e6d7kG1	A: alpha arrays	X: Methane monooxygenase hydrolase gamma subunit-like	H: Methane monooxygenase hydrolase gamma subunit (From Topology)	T: Methane monooxygenase hydrolase gamma subunit	F: MeMO_Hyd_G	ECOD (1.6)
C	MeMO_Hyd_G	e6d7kC1	A: alpha arrays	X: Methane monooxygenase hydrolase gamma subunit-like	H: Methane monooxygenase hydrolase gamma subunit (From Topology)	T: Methane monooxygenase hydrolase gamma subunit	F: MeMO_Hyd_G	ECOD (1.6)
F	Phenol_Hydrox	e6d7kF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: Phenol_Hydrox	ECOD (1.6)
B	Phenol_Hydrox	e6d7kB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: Phenol_Hydrox	ECOD (1.6)
E	Phenol_Hydrox	e6d7kE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: Phenol_Hydrox	ECOD (1.6)
A	Phenol_Hydrox	e6d7kA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: Phenol_Hydrox	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G	1.20.1280.10	Mainly Alpha	Up-down Bundle	Monooxygenase	Methane monooxygenase, gamma chain, domain 1	CATH (utative)
G	1.20.1280.30	Mainly Alpha	Up-down Bundle	Monooxygenase	Methane monooxygenase, gamma chain, domain 2	CATH (utative)
C	1.20.1280.10	Mainly Alpha	Up-down Bundle	Monooxygenase	Methane monooxygenase, gamma chain, domain 1	CATH (utative)
C	1.20.1280.30	Mainly Alpha	Up-down Bundle	Monooxygenase	Methane monooxygenase, gamma chain, domain 2	CATH (utative)
F	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (utative)
B	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (utative)
E	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (utative)
A	1.10.620.20	Mainly Alpha	Orthogonal Bundle	Ribonucleotide Reductase, subunit A	Ribonucleotide Reductase, subunit A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, G	PF02964	Methane monooxygenase, hydrolase gamma chain (MeMO_Hyd_G)	Methane monooxygenase, hydrolase gamma chain		Domain
B, F	PF02332	Methane/Phenol/Alkene Hydroxylase (Phenol_Hydrox)	Methane/Phenol/Alkene Hydroxylase	This protein family includes several components of multicomponent enzyme systems predominantly found in Proteobacteria and Actinobacteria, including subunits alpha and beta of a methane monooxygenase and an alkene monooxygenase system, small and larg ...	This protein family includes several components of multicomponent enzyme systems predominantly found in Proteobacteria and Actinobacteria, including subunits alpha and beta of a methane monooxygenase and an alkene monooxygenase system, small and large subunits of propane 2-monooxygenase system and P1 protein of phenol hydroxylase [1-4].	Domain
A, E	PF02332	Methane/Phenol/Alkene Hydroxylase (Phenol_Hydrox)	Methane/Phenol/Alkene Hydroxylase	This protein family includes several components of multicomponent enzyme systems predominantly found in Proteobacteria and Actinobacteria, including subunits alpha and beta of a methane monooxygenase and an alkene monooxygenase system, small and larg ...	This protein family includes several components of multicomponent enzyme systems predominantly found in Proteobacteria and Actinobacteria, including subunits alpha and beta of a methane monooxygenase and an alkene monooxygenase system, small and large subunits of propane 2-monooxygenase system and P1 protein of phenol hydroxylase [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, H	Methane monooxygenase hydroxylase, MmoD	monooxygenase activity oxidoreductase activity catalytic activity	-	-
C, G	Methane monooxygenase hydroxylase, MmoZ	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen methane monooxygenase [NAD(P)H] activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen catalytic activity	methane metabolic process metabolic process cellular process hydrocarbon metabolic process	-
B, F	Methane monooxygenase hydroxylase, MmoY	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen catalytic activity	-	-
A, E	Methane monooxygenase hydroxylase, MmoX1	monooxygenase activity oxidoreductase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, H	IPR017256	Methane monooxygenase component D	Family
C, G	IPR015952	Methane monooxygenase, gamma chain, domain 1	Homologous Superfamily
C, G	IPR054953	Methane monooxygenase component A gamma chain	Family
C, G	IPR015953	Methane monooxygenase, gamma chain, domain 2	Homologous Superfamily
C, G	IPR036123	Methane monooxygenase, gamma chain superfamily	Homologous Superfamily
C, G	IPR004222	Methane monooxygenase, gamma chain	Family
B, F	IPR054956	Methane monooxygenase component A beta chain	Family
B, F	IPR009078	Ferritin-like superfamily	Homologous Superfamily
B, F	IPR003430	Propane/methane/phenol/toluene hydroxylase	Family
B, F	IPR012078	Methane/phenol monooxygenase, hydroxylase component	Family
B, F	IPR012348	Ribonucleotide reductase-like	Homologous Superfamily
A, E	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, E	IPR003430	Propane/methane/phenol/toluene hydroxylase	Family
A, E	IPR012348	Ribonucleotide reductase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.