6D0Y
X-ray Crystal Structure of PGC-1beta C-terminus bound to the CBP80-CBP20 Cap Binding Complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | ARM repeat-like | 8042371 | 3000116 | SCOP2B (2022-06-29) |
A [auth C] | SCOP2B Superfamily | ARM repeat-like | 8042373 | 3000116 | SCOP2B (2022-06-29) |
A [auth C] | SCOP2B Superfamily | ARM repeat-like | 8042374 | 3000116 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | RNA-binding domain RBD | 8042382 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | MIF4G | e6d0yC2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G | ECOD (1.6) |
A [auth C] | MIF4G_like | e6d0yC3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like | ECOD (1.6) |
A [auth C] | MIF4G_like_2 | e6d0yC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like_2 | ECOD (1.6) |
B [auth A] | RRM_1_6 | e6d0yA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
B [auth A] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C] | PF09088 | MIF4G like (MIF4G_like) | MIF4G like | - | Repeat |
A [auth C] | PF09090 | MIF4G like (MIF4G_like_2) | MIF4G like | - | Repeat |
A [auth C] | PF02854 | MIF4G domain (MIF4G) | MIF4G domain | - | Repeat |
B [auth A] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
A [auth C] | IPR015172 | MIF4G-like, type 1 | Domain |
A [auth C] | IPR027159 | Nuclear cap-binding protein subunit 1 | Family |
A [auth C] | IPR015174 | MIF4G-like, type 2 | Domain |
A [auth C] | IPR003890 | MIF4G-like, type 3 | Domain |
B [auth A] | IPR034148 | NCBP2, RNA recognition motif | Domain |
B [auth A] | IPR000504 | RNA recognition motif domain | Domain |
B [auth A] | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
B [auth A] | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
B [auth A] | IPR027157 | Nuclear cap-binding protein subunit 2 | Family |
C [auth B] | IPR000504 | RNA recognition motif domain | Domain |
C [auth B] | IPR034605 | PGC-1 | Family |
C [auth B] | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
C [auth B] | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
C [auth B] | IPR034177 | PPARGC1B, RNA recognition motif | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth B] | ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | : 
C [auth B] | IYR | Parent Component: TYR :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0509 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , 3'-iodo-L-tyrosine MOD:01612 |