6BWY | pdb_00006bwy

DNA substrate selection by APOBEC3G

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth G]	SCOP2B Superfamily	Cytidine deaminase-like	8105521	3001838	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	Nucleic acid-binding proteins	8040116	3000135	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Cytidine deaminase-like	8105521	3001838	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Nucleic acid-binding proteins	8040116	3000135	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	Cytidine deaminase-like	8105521	3001838	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	Nucleic acid-binding proteins	8040116	3000135	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Cytidine deaminase-like	8105521	3001838	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Nucleic acid-binding proteins	8040116	3000135	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth G]	Ras	e6bwyG1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Rubredoxin-related	F: Ras	ECOD (v294.1)
G [auth E]	Ras	e6bwyE1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Rubredoxin-related	F: Ras	ECOD (v294.1)
F [auth B]	Ras	e6bwyB1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Rubredoxin-related	F: Ras	ECOD (v294.1)
E [auth A]	Acetyltransf_3	e6bwyA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: Acetyltransf_3	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth G]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (utative)
G [auth E]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (utative)
F [auth B]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (utative)
E [auth A]	2.40.50.140	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	Nucleic acid-binding proteins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth A], F [auth B], G [auth E], H [auth G]	PF02765	Telomeric single stranded DNA binding POT1/CDC13 (POT1)	Telomeric single stranded DNA binding POT1/CDC13	This domain binds single stranded telomeric DNA and adopts an OB fold [1]. It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [2-4]. POT1 is one component of the shelterin complex that ...	This domain binds single stranded telomeric DNA and adopts an OB fold [1]. It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [2-4]. POT1 is one component of the shelterin complex that protects telomere-ends from attack by DNA-repair mechanisms [5,6].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth I], B [auth C], C [auth D], D [auth F]	DNA (30-MER)	-	-	-
E [auth A], F [auth B], G [auth E], H [auth G]	Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion	sequence-specific DNA binding DNA binding G-rich strand telomeric DNA binding binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding nucleic acid binding telomeric repeat DNA binding enzyme regulator activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity telomerase inhibitor activity sequence-specific DNA binding DNA binding G-rich strand telomeric DNA binding binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding nucleic acid binding telomeric repeat DNA binding enzyme regulator activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity telomerase inhibitor activity RNA binding hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines cytidine deaminase activity hydrolase activity catalytic activity deaminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds dCTP deaminase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	regulation of telomere maintenance regulation of cellular component organization regulation of cellular process telomere organization regulation of DNA biosynthetic process regulation of primary metabolic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening cellular component organization nucleobase-containing compound metabolic process nucleic acid biosynthetic process cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process regulation of biosynthetic process regulation of telomere maintenance regulation of cellular component organization regulation of cellular process telomere organization regulation of DNA biosynthetic process regulation of primary metabolic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening cellular component organization nucleobase-containing compound metabolic process nucleic acid biosynthetic process cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process regulation of biosynthetic process regulation of biological process telomere maintenance via telomerase biological regulation chromosome organization primary metabolic process DNA metabolic process regulation of chromosome organization regulation of macromolecule metabolic process regulation of telomere maintenance via telomere lengthening nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process regulation of organelle organization regulation of telomere maintenance via telomerase telomere maintenance organelle organization biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process DNA biosynthetic process regulation of DNA metabolic process telomere capping negative regulation of biological process negative regulation of cellular process negative regulation of macromolecule metabolic process retrotransposition negative regulation of metabolic process gene expression transposition regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process transposable element silencing cytidine to uridine editing RNA metabolic process RNA modification base conversion or substitution editing macromolecule modification negative regulation of viral process regulation of viral process viral process biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus DNA cytosine deamination DNA deamination DNA modification defense response to virus antiviral innate immune response response to virus negative regulation of viral genome replication viral life cycle regulation of viral life cycle viral genome replication regulation of viral genome replication regulation of defense response regulation of response to biotic stimulus regulation of response to external stimulus regulation of defense response to virus regulation of response to stimulus regulation of response to stress positive regulation of defense response to virus by host regulation of defense response to virus by host regulation of single stranded viral RNA replication via double stranded DNA intermediate negative regulation of single stranded viral RNA replication via double stranded DNA intermediate negative regulation of RNA biosynthetic process RNA biosynthetic process regulation of RNA metabolic process viral RNA genome replication negative regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process single stranded viral RNA replication via double stranded DNA intermediate negative regulation of RNA metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleus intracellular membraneless organelle nuclear protein-containing complex chromosome intracellular membrane-bounded organelle chromosomal region intracellular organelle cellular anatomical structure organelle telomere cap complex membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleus intracellular membraneless organelle nuclear protein-containing complex chromosome intracellular membrane-bounded organelle chromosomal region intracellular organelle cellular anatomical structure organelle telomere cap complex membraneless organelle chromosome, telomeric repeat region chromosome, telomeric region shelterin complex nuclear telomere cap complex cytoplasm cytosol apolipoprotein B mRNA editing enzyme complex catalytic complex mRNA editing complex cytoplasmic ribonucleoprotein granule ribonucleoprotein granule supramolecular complex P-body ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth A], F [auth B], G [auth E], H [auth G]	IPR032042	Protection of telomeres protein 1, ssDNA-binding domain	Domain
E [auth A], F [auth B], G [auth E], H [auth G]	IPR011564	Telomeric single stranded DNA binding POT1/Cdc13	Domain
E [auth A], F [auth B], G [auth E], H [auth G]	IPR028389	Protection of telomeres protein 1	Family
E [auth A], F [auth B], G [auth E], H [auth G]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
E [auth A], F [auth B], G [auth E], H [auth G]	IPR050610	APOBEC Cytidine Deaminase	Family
E [auth A], F [auth B], G [auth E], H [auth G]	IPR016193	Cytidine deaminase-like	Homologous Superfamily
E [auth A], F [auth B], G [auth E], H [auth G]	IPR002125	Cytidine and deoxycytidylate deaminase domain	Domain
E [auth A], F [auth B], G [auth E], H [auth G]	IPR016192	APOBEC/CMP deaminase, zinc-binding	Binding Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth A], F [auth B], G [auth E], H [auth G]	Pharos: Q9HC16	Sjogren syndrome ulcerative colitis adrenal cortex carcinoma B-cell chronic lymphocytic leukemia Crohn disease invasive ductal breast carcinoma malignant glioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma AIDS breast cancer cutaneous lupus erythematosus lung cancer malignant mesothelioma Sjogren syndrome ulcerative colitis adrenal cortex carcinoma B-cell chronic lymphocytic leukemia Crohn disease invasive ductal breast carcinoma malignant glioma ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma AIDS breast cancer cutaneous lupus erythematosus lung cancer malignant mesothelioma pilocytic astrocytoma psoriasis tuberculosis astrocytic tumor chronic kidney disease glioblastoma lung carcinoma osteosarcoma pituitary cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.