5X07

Crystal structure of FOXA2 DNA binding domain bound to a full consensus DNA site

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth F]	Forkhead	e5x07F1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Forkhead	ECOD (1.6)
F [auth C]	Forkhead	e5x07C1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Forkhead	ECOD (1.6)
I	Forkhead	e5x07I1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Forkhead	ECOD (1.6)
L	Forkhead	e5x07L1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Forkhead	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth F]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
F [auth C]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
I	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
L	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth F], F [auth C], I, L	PF08430	Forkhead N-terminal region (Forkhead_N)	Forkhead N-terminal region	-	Family
C [auth F], F [auth C], I, L	PF00250	Forkhead domain (Forkhead)	Forkhead domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], D [auth A], G, J	DNA (5'-D(TPCPTPTPGPTPTPTPAPCPAPTPTPTPTPG)-3')	-	-	-
B [auth E], E [auth B], H, K	DNA (5'-D(CPAPAPAPAPTPGPTPAPAPAPCPAPAPGPA)-3')	-	-	-
C [auth F], F [auth C], I, L	Hepatocyte nuclear factor 3-beta	binding organic cyclic compound binding nucleic acid binding protein binding protein domain specific binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding binding organic cyclic compound binding nucleic acid binding protein binding protein domain specific binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific	regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin cellular process regulation of cell-cell adhesion positive regulation of cellular process regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin cellular process regulation of cell-cell adhesion positive regulation of cellular process regulation of cell-cell adhesion mediated by cadherin developmental process cellular developmental process cell differentiation cell fate specification cell fate commitment adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior cellular biosynthetic process negative regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process negative regulation of molecular function primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of molecular function organic cyclic compound metabolic process regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process regulation of embryonic development regulation of multicellular organismal development regulation of gastrulation regulation of developmental process embryonic morphogenesis positive regulation of gastrulation embryo development gastrulation positive regulation of developmental process multicellular organism development anatomical structure morphogenesis anatomical structure development positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of anatomical structure morphogenesis protein localization cellular response to stimulus regulation of localization establishment of protein localization response to organic substance nitrogen compound transport response to stimulus cell communication localization carbohydrate homeostasis cellular macromolecule localization establishment of localization in cell regulation of biological quality regulation of peptide hormone secretion regulation of hormone levels organic substance transport establishment of protein localization to extracellular region intracellular glucose homeostasis protein secretion establishment of localization cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis response to glucose response to chemical glucose homeostasis insulin secretion involved in cellular response to glucose stimulus cellular localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling homeostatic process hormone secretion protein localization to extracellular region peptide secretion secretion by cell regulation of secretion by cell response to monosaccharide response to carbohydrate amide transport signal release cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus cellular response to organic substance regulation of signaling secretion regulation of transport regulation of peptide transport regulation of establishment of protein localization cell-cell signaling export from cell response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis protein transport regulation of cellular localization regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication insulin secretion response to interleukin-6 response to cytokine pancreas development endocrine system development animal organ development endocrine pancreas development system development regulation of epithelial to mesenchymal transition negative regulation of biological process regulation of cell differentiation mesenchyme development negative regulation of cellular process negative regulation of cell differentiation negative regulation of developmental process tissue development negative regulation of epithelial to mesenchymal transition epithelial to mesenchymal transition mesenchymal cell differentiation negative regulation of multicellular organismal process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of macromolecule metabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process regulation of transcription from RNA polymerase II promoter by glucose carbon catabolite regulation of transcription transcription by RNA polymerase II positive regulation of transcription by glucose regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II cellular response to nutrient levels carbon catabolite regulation of transcription from RNA polymerase II promoter carbon catabolite activation of transcription from RNA polymerase II promoter carbon catabolite activation of transcription response to nutrient levels positive regulation of transcription from RNA polymerase II promoter by glucose response to nutrient cellular response to nutrient regulation of transcription by glucose regulation of body fluid levels wound healing regulation of response to external stimulus regulation of blood coagulation hemostasis response to external stimulus blood coagulation regulation of coagulation regulation of response to wounding regulation of response to stimulus response to stress regulation of response to stress regulation of wound healing coagulation response to wounding regulation of hemostasis dopaminergic neuron differentiation nervous system development generation of neurons neurogenesis neuron differentiation negative regulation of transcription from RNA polymerase II promoter by glucose negative regulation of transcription by glucose monosaccharide metabolic process regulation of catalytic activity negative regulation of glucokinase activity negative regulation of phosphate metabolic process negative regulation of catalytic activity regulation of transferase activity negative regulation of cellular metabolic process negative regulation of hexokinase activity negative regulation of kinase activity negative regulation of transferase activity regulation of small molecule metabolic process regulation of phosphate metabolic process regulation of glucokinase activity phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process carbohydrate metabolic process phosphorylation negative regulation of metabolic process hexose metabolic process regulation of kinase activity regulation of hexokinase activity negative regulation of phosphorus metabolic process regulation of phosphorylation regulation of phosphorus metabolic process negative regulation of phosphorylation glucose metabolic process primitive streak formation anterior/posterior pattern specification pattern specification process regionalization anterior/posterior axis specification gastrulation with mouth forming second anatomical structure formation involved in morphogenesis axis specification protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization cellular component organization or biogenesis	cell junction cellular anatomical entity intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cell junction cellular anatomical entity intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F], F [auth C], I, L	IPR013638	Fork-head N-terminal	Domain
C [auth F], F [auth C], I, L	IPR018122	Fork head domain conserved site1	Conserved Site
C [auth F], F [auth C], I, L	IPR001766	Fork head domain	Domain
C [auth F], F [auth C], I, L	IPR018533	Forkhead box protein, C-terminal	Domain
C [auth F], F [auth C], I, L	IPR030456	Fork head domain conserved site 2	Conserved Site
C [auth F], F [auth C], I, L	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C [auth F], F [auth C], I, L	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth F], F [auth C], I, L	Pharos: Q9Y261	Liver Cirrhosis, Experimental congenital diaphragmatic hernia hypothyroidism lung cancer non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia large cell medulloblastoma lung carcinoma malignant colon neoplasm ovarian cancer ulcerative colitis esophageal adenocarcinoma lung disease medulloblastoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.