5X07 | pdb_00005x07

Crystal structure of FOXA2 DNA binding domain bound to a full consensus DNA site

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth C]	KOW5_SPT5	e5x07C1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: KOW5_SPT5	ECOD (v294.1)
I	KOW5_SPT5	e5x07I1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: KOW5_SPT5	ECOD (v294.1)
L	KOW5_SPT5	e5x07L1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: KOW5_SPT5	ECOD (v294.1)
C [auth F]	KOW5_SPT5	e5x07F1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: KOW5_SPT5	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth C]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
I	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
L	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)
C [auth F]	1.10.10.10	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth F], F [auth C], I, L	PF00250	Forkhead domain (Forkhead)	Forkhead domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], D [auth A], G, J	DNA (5'-D(TPCPTPTPGPTPTPTPAPCPAPTPTPTPTPG)-3')	-	-	-
B [auth E], E [auth B], H, K	DNA (5'-D(CPAPAPAPAPTPGPTPAPAPAPCPAPAPGPA)-3')	-	-	-
C [auth F], F [auth C], I, L	Hepatocyte nuclear factor 3-beta	binding nucleic acid binding protein binding protein domain specific binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding binding nucleic acid binding protein binding protein domain specific binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding transcription regulatory region nucleic acid binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding transcription corepressor activity transcription coregulator activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin cellular process regulation of cell-cell adhesion positive regulation of cellular process regulation of biological process regulation of cellular process positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process positive regulation of cell-cell adhesion cell adhesion cell-cell adhesion positive regulation of cell-cell adhesion mediated by cadherin cell-cell adhesion mediated by cadherin cellular process regulation of cell-cell adhesion positive regulation of cellular process regulation of cell-cell adhesion mediated by cadherin developmental process cellular developmental process cell differentiation cell fate specification cell fate commitment adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior regulation of embryonic development regulation of multicellular organismal development regulation of gastrulation regulation of developmental process embryonic morphogenesis positive regulation of gastrulation embryo development gastrulation positive regulation of developmental process multicellular organism development anatomical structure morphogenesis anatomical structure development positive regulation of embryonic development positive regulation of multicellular organismal process regulation of multicellular organismal process regulation of anatomical structure morphogenesis cellular response to stimulus regulation of localization establishment of protein localization nitrogen compound transport response to stimulus cell communication localization carbohydrate homeostasis establishment of localization in cell intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of hormone levels establishment of protein localization to extracellular region intracellular glucose homeostasis protein secretion establishment of localization cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis response to glucose response to chemical glucose homeostasis insulin secretion involved in cellular response to glucose stimulus cellular localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling homeostatic process hormone secretion protein localization to extracellular region peptide secretion regulation of secretion by cell secretion by cell response to monosaccharide response to carbohydrate signal release cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus regulation of signaling regulation of transport secretion regulation of peptide transport regulation of establishment of protein localization export from cell cell-cell signaling response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis regulation of cellular localization protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication insulin secretion response to peptide response to interleukin-6 response to cytokine pancreas development endocrine system development animal organ development endocrine pancreas development system development regulation of epithelial to mesenchymal transition negative regulation of biological process regulation of cell differentiation mesenchyme development negative regulation of cellular process negative regulation of cell differentiation negative regulation of developmental process tissue development negative regulation of epithelial to mesenchymal transition epithelial to mesenchymal transition mesenchymal cell differentiation negative regulation of multicellular organismal process positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process regulation of body fluid levels wound healing regulation of response to external stimulus regulation of blood coagulation hemostasis response to external stimulus blood coagulation regulation of coagulation regulation of response to wounding regulation of response to stimulus response to stress regulation of response to stress regulation of wound healing coagulation response to wounding regulation of hemostasis dopaminergic neuron differentiation nervous system development generation of neurons neurogenesis neuron differentiation positive regulation of transcription by RNA polymerase II primitive streak formation anterior/posterior pattern specification pattern specification process regionalization anterior/posterior axis specification gastrulation with mouth forming second anatomical structure formation involved in morphogenesis axis specification cellular component organization chromatin organization cellular component organization or biogenesis	cellular anatomical structure cell junction intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure cell junction intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth F], F [auth C], I, L	IPR013638	Fork-head N-terminal	Domain
C [auth F], F [auth C], I, L	IPR018122	Fork head domain conserved site1	Conserved Site
C [auth F], F [auth C], I, L	IPR001766	Fork head domain	Domain
C [auth F], F [auth C], I, L	IPR018533	Forkhead box protein, C-terminal	Domain
C [auth F], F [auth C], I, L	IPR030456	Fork head domain conserved site 2	Conserved Site
C [auth F], F [auth C], I, L	IPR050211	Forkhead box domain-containing protein	Family
C [auth F], F [auth C], I, L	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
C [auth F], F [auth C], I, L	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth F], F [auth C], I, L	Pharos: Q9Y261	Liver Cirrhosis, Experimental congenital diaphragmatic hernia hypothyroidism lung cancer non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia large cell medulloblastoma lung carcinoma malignant colon neoplasm ovarian cancer ulcerative colitis esophageal adenocarcinoma lung disease medulloblastoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.