Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Id5oyai_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Jd5oyaj_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Kd5oyak_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Ld5oyal_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Md5oyam_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Nd5oyan_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Od5oyao_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Pd5oyap_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Ad5oyaa2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Ad5oyaa1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Bd5oyab2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Bd5oyab1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Dd5oyad2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Dd5oyad1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Ed5oyae2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Ed5oyae1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Fd5oyaf2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Fd5oyaf1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Gd5oyag2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Gd5oyag1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Hd5oyah2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Hd5oyah1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Cd5oyac2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)
Cd5oyac1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Chaetoceros socialis ) [TaxId: 163503 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)
MSCOP2 FamilyRuBisCO small subunit8095090 4001455 SCOP2 (2022-06-29)
MSCOP2 SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2 (2022-06-29)
NSCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRuBisCO small subunit8095091 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IPF00101e5oyaI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
JPF00101e5oyaJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
KPF00101e5oyaK1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
LPF00101e5oyaL1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
MPF00101e5oyaM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
NPF00101e5oyaN1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
OPF00101e5oyaO1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
PPF00101e5oyaP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
APF02788e5oyaA2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
APF00016e5oyaA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
BPF02788e5oyaB2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
BPF00016e5oyaB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
DPF02788e5oyaD1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
DPF00016e5oyaD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
EPF02788e5oyaE1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
EPF00016e5oyaE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
FPF02788e5oyaF2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
FPF00016e5oyaF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
GPF02788e5oyaG2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
GPF00016e5oyaG1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
HPF02788e5oyaH1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
HPF00016e5oyaH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
CPF02788e5oyaC2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
CPF00016e5oyaC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
K3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
M3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
O3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
B3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
D3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
D3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
F3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
F3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
H3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
H3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I, J, K, L, M
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain
A, B, D, E, F
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A, B, D, E, F
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, J, K, L, M
Rubisco small subunit
A, B, D, E, F
Rubisco large subunit
Rubisco large subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I, J, K, L, M
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
I, J, K, L, M
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
I, J, K, L, M
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain
A, B, D, E, F
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
A, B, D, E, F
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
A, B, D, E, F
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
A, B, D, E, F
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
A, B, D, E, F
IPR033966RuBisCOFamily
A, B, D, E, F
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, D, E, F
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B, D, E, F
CSO Parent Component: CYS

RESIDAA0205

PSI-MOD :  L-cysteine sulfenic acid MOD:00210
A, B, D, E, F
HL2 Parent Component: LEU

RESIDAA0205

A, B, D, E, F
HYP Parent Component: PRO

RESIDAA0205 , AA0030

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039
A, B, D, E, F
KCX Parent Component: LYS

RESIDAA0205 , AA0030

A, B, D, E, F
LOH RESIDAA0205 , AA0030

A, B, D, E, F
M3L Parent Component: LYS

RESIDAA0205 , AA0030 , AA0074

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083
A, B, D, E, F
SNC Parent Component: CYS

RESIDAA0205 , AA0030 , AA0074

CSO Parent Component: CYS

RESIDAA0205 , AA0030 , AA0074 , AA0205

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , L-cysteine sulfenic acid MOD:00210
HL2 Parent Component: LEU

RESIDAA0205 , AA0030 , AA0074 , AA0205

HYP Parent Component: PRO

RESIDAA0205 , AA0030 , AA0074 , AA0205 , AA0030

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039
KCX Parent Component: LYS

RESIDAA0205 , AA0030 , AA0074 , AA0205 , AA0030

LOH RESIDAA0205 , AA0030 , AA0074 , AA0205 , AA0030

M3L Parent Component: LYS

RESIDAA0205 , AA0030 , AA0074 , AA0205 , AA0030 , AA0074

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083
SNC Parent Component: CYS

RESIDAA0205 , AA0030 , AA0074 , AA0205 , AA0030 , AA0074