5JHW

Crystal Structure of the GDF11:Follistatin 288 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5jhwa_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5jhwb_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cystine-knot cytokines	8089948	3000846	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cystine-knot cytokines	8089948	3000846	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00019	e5jhwA1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: PF00019	ECOD (1.6)
B	PF00019	e5jhwB1	A: few secondary structure elements	X: Cystine-knot cytokines (From Topology)	H: Cystine-knot cytokines (From Topology)	T: Cystine-knot cytokines	F: PF00019	ECOD (1.6)
C	PF21333	e5jhwC3	A: few secondary structure elements	X: TB module/8-cys domain (From Topology)	H: TB module/8-cys domain (From Topology)	T: TB module/8-cys domain	F: PF21333	ECOD (1.6)
C	PF07648	e5jhwC6	A: few secondary structure elements	X: Kazal-type serine protease inhibitors-like	H: Kazal-type serine protease inhibitors (From Topology)	T: Kazal-type serine protease inhibitors	F: PF07648	ECOD (1.6)
C	F_UNCLASSIFIED	e5jhwC2	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: F_UNCLASSIFIED	ECOD (1.6)
C	PF09289	e5jhwC7	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: PF09289	ECOD (1.6)
D	PF21333	e5jhwD4	A: few secondary structure elements	X: TB module/8-cys domain (From Topology)	H: TB module/8-cys domain (From Topology)	T: TB module/8-cys domain	F: PF21333	ECOD (1.6)
D	PF07648	e5jhwD3	A: few secondary structure elements	X: Kazal-type serine protease inhibitors-like	H: Kazal-type serine protease inhibitors (From Topology)	T: Kazal-type serine protease inhibitors	F: PF07648	ECOD (1.6)
D	F_UNCLASSIFIED	e5jhwD7	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: F_UNCLASSIFIED	ECOD (1.6)
D	PF09289	e5jhwD2	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: PF09289	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.90.290.10	Alpha Beta	Alpha-Beta Complex	Extracellular Matrix Fibrillin	TGF-beta binding (TB) domain	CATH (4.3.0)
C	3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)
D	3.90.290.10	Alpha Beta	Alpha-Beta Complex	Extracellular Matrix Fibrillin	TGF-beta binding (TB) domain	CATH (4.3.0)
D	3.30.60.30	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00019	Transforming growth factor beta like domain (TGF_beta)	Transforming growth factor beta like domain	-	Domain
C, D	PF09289	Follistatin/Osteonectin-like EGF domain (FOLN)	Follistatin/Osteonectin-like EGF domain	Members of this family are predominantly found in osteonectin and follistatin and adopt an EGF-like fold [1,2].	Domain
C, D	PF21333	Follistatin, N-terminal (FST_N)	Follistatin, N-terminal	Follistatin (FST) is required for normal embryonic and ovarian follicle development. It regulates transforming growth factor-beta superfamily ligands, being described as a ligand antagonist. It consists of a N-terminal domain with a modified TB fold ...	Follistatin (FST) is required for normal embryonic and ovarian follicle development. It regulates transforming growth factor-beta superfamily ligands, being described as a ligand antagonist. It consists of a N-terminal domain with a modified TB fold and three follistatin domains (FSD1-3) each of which is subdivided in EGF-like and Kazal-like subdomains [1-4]. This domain is important for ligand specificity.	Domain
C, D	PF07648	Kazal-type serine protease inhibitor domain (Kazal_2)	Kazal-type serine protease inhibitor domain	Usually indicative of serine protease inhibitors. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays. Small alpha+beta fold containi ...	Usually indicative of serine protease inhibitors. However, kazal-like domains are also seen in the extracellular part of agrins, which are not known to be protease inhibitors. Kazal domains often occur in tandem arrays. Small alpha+beta fold containing three disulphides.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Growth/differentiation factor 11	protein binding binding molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity cytokine activity	developmental process anatomical structure development tissue development mesoderm development multicellular organism development multicellular organismal process skeletal system development system development cell population proliferation cellular process cellular developmental process cell development glandular epithelial cell maturation epithelial cell differentiation developmental process anatomical structure development tissue development mesoderm development multicellular organism development multicellular organismal process skeletal system development system development cell population proliferation cellular process cellular developmental process cell development glandular epithelial cell maturation epithelial cell differentiation columnar/cuboidal epithelial cell development pancreas development cell differentiation endocrine pancreas development cell maturation type B pancreatic cell differentiation glandular epithelial cell development epithelium development type B pancreatic cell maturation endocrine system development animal organ development developmental maturation type B pancreatic cell development glandular epithelial cell differentiation epithelial cell development anatomical structure maturation columnar/cuboidal epithelial cell differentiation epithelial cell maturation enteroendocrine cell differentiation columnar/cuboidal epithelial cell maturation regulation of cellular process regulation of developmental process sensory organ development negative regulation of biological process retina development in camera-type eye visual system development neural retina development regulation of cell differentiation neurogenesis regulation of amacrine cell differentiation amacrine cell differentiation neuron differentiation negative regulation of cellular process negative regulation of cell differentiation sensory system development regulation of biological process eye development negative regulation of developmental process negative regulation of amacrine cell differentiation biological regulation nervous system development generation of neurons camera-type eye development negative regulation of neuron differentiation regulation of neuron differentiation ureteric bud development mesonephric epithelium development kidney epithelium development mesonephros development tube development renal system development kidney development mesonephric tubule development cellular response to stimulus cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway response to stimulus signaling intracellular signal transduction cell communication SMAD protein signal transduction intracellular signaling cassette signal transduction enzyme-linked receptor protein signaling pathway negative regulation of cell population proliferation regulation of cell population proliferation camera-type eye morphogenesis eye morphogenesis anatomical structure morphogenesis sensory organ morphogenesis animal organ morphogenesis metanephros development roof of mouth development anterior/posterior pattern specification pattern specification process regionalization spinal cord development spinal cord anterior/posterior patterning central nervous system development spinal cord patterning	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle cellular anatomical entity nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex extracellular region membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle cellular anatomical entity nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex extracellular region extracellular space
C, D	Follistatin	protein-containing complex binding activin binding binding activin receptor antagonist activity molecular function inhibitor activity protein binding signaling receptor binding molecular function regulator activity signaling receptor inhibitor activity receptor antagonist activity signaling receptor regulator activity heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding protein-containing complex binding activin binding binding activin receptor antagonist activity molecular function inhibitor activity protein binding signaling receptor binding molecular function regulator activity signaling receptor inhibitor activity receptor antagonist activity signaling receptor regulator activity heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding sulfur compound binding	developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular developmental process cell differentiation cellular process cellular response to stimulus cellular response to BMP stimulus regulation of biological process cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process cellular response to growth factor stimulus developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular developmental process cell differentiation cellular process cellular response to stimulus cellular response to BMP stimulus regulation of biological process cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process cellular response to growth factor stimulus cell surface receptor signaling pathway response to stimulus signaling response to endogenous stimulus biological regulation cell communication cellular response to endogenous stimulus response to BMP transforming growth factor beta receptor superfamily signaling pathway signal transduction response to growth factor BMP signaling pathway enzyme-linked receptor protein signaling pathway sexual reproduction reproductive process multicellular organismal reproductive process gamete generation activin receptor signaling pathway negative regulation of signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication negative regulation of activin receptor signaling pathway negative regulation of cellular process regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of activin receptor signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis animal organ development animal organ morphogenesis skeletal system development system development cell population proliferation epithelial cell proliferation keratinocyte proliferation regulation of developmental process regulation of cell differentiation epithelial cell differentiation regulation of epithelial cell differentiation regulation of multicellular organismal process negative regulation of cell differentiation epithelium development regulation of multicellular organismal development negative regulation of epithelial cell differentiation negative regulation of developmental process tissue development epidermis development molting cycle process hair cycle epidermis morphogenesis morphogenesis of an epithelium tissue morphogenesis skin development skin epidermis development hair follicle development molting cycle hair cycle process hair follicle morphogenesis regulation of BMP signaling pathway regulation of cellular response to growth factor stimulus positive regulation of biological process regulation of hair cycle positive regulation of developmental process positive regulation of hair follicle development regulation of hair follicle development positive regulation of multicellular organismal process hemopoiesis cell development hematopoietic progenitor cell differentiation negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II cellular metabolic process negative regulation of metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process response to organic substance response to chemical response to organic cyclic compound ameloblast differentiation columnar/cuboidal epithelial cell differentiation gonad development reproductive system development female gonad development sex differentiation female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction development of primary sexual characteristics reproductive structure development	intracellular anatomical structure cytoplasm cellular anatomical entity extracellular region extracellular space membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR029034	Cystine-knot cytokine	Homologous Superfamily
A, B	IPR015615	Transforming growth factor-beta-related	Family
A, B	IPR017948	Transforming growth factor beta, conserved site	Conserved Site
A, B	IPR001111	TGF-beta, propeptide	Domain
A, B	IPR001839	Transforming growth factor-beta, C-terminal	Domain
C, D	IPR015369	Follistatin/Osteonectin EGF domain	Domain
C, D	IPR036058	Kazal domain superfamily	Homologous Superfamily
C, D	IPR002350	Kazal domain	Domain
C, D	IPR003645	Follistatin-like, N-terminal	Domain
C, D	IPR036773	TGF-beta binding (TB) domain superfamily	Homologous Superfamily
C, D	IPR017878	TB domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O95390	age-related macular degeneration Currarino triad myelodysplastic syndrome pituitary cancer atrial fibrillation lung cancer osteosarcoma wet macular degeneration beta thalassemia medulloblastoma ovarian cancer
C, D	Pharos: P19883	acute liver failure breast cancer liver cancer breast carcinoma Liver carcinoma malignant glioma myopathy ovarian cancer pituitary cancer atypical teratoid rhabdoid tumor psoriasis cystic fibrosis gastric cancer hepatocellular carcinoma large cell medulloblastoma acute liver failure breast cancer liver cancer breast carcinoma Liver carcinoma malignant glioma myopathy ovarian cancer pituitary cancer atypical teratoid rhabdoid tumor psoriasis cystic fibrosis gastric cancer hepatocellular carcinoma large cell medulloblastoma liver neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia amyotrophic lateral sclerosis polycystic ovary syndrome Duchenne muscular dystrophy gastric neoplasm hereditary diffuse gastric adenocarcinoma lung cancer medulloblastoma osteosarcoma acne pilocytic astrocytoma atopic eczema primitive neuroectodermal tumor ulcerative colitis Emery-Dreifuss muscular dystrophy glioblastoma juvenile dermatomyositis

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.