5JFI | pdb_00005jfi

Crystal structure of a TDIF-TDR complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	Sigma70_r4_2	e5jfiB1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Sigma70_r4_2	ECOD (v294.1)
A	Sigma70_r4_2	e5jfiA1	A: a/b three-layered sandwiches	X: Spectrin repeat-like	H: TIM barrels	T: TIM barrels	F: Sigma70_r4_2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B]	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat
A, C [auth B]	PF23598	Leucine-rich repeat region (LRR_14)	Leucine-rich repeat region	-	Repeat
A, C [auth B]	PF00560	Leucine Rich Repeat (LRR_1)	Leucine Rich Repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B]	Leucine-rich repeat receptor-like protein kinase TDR	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine/threonine kinase activity protein serine kinase activity	developmental process phloem or xylem histogenesis xylem development anatomical structure development tissue development cellular process cell division multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation developmental process phloem or xylem histogenesis xylem development anatomical structure development tissue development cellular process cell division multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation anatomical structure formation involved in morphogenesis shoot system development plant organ formation system development reproductive system development reproductive process procambium histogenesis developmental process involved in reproduction embryo development fruit development meristem development embryo development ending in seed dormancy seed development reproductive structure development post-embryonic development embryonic meristem development primary meristem tissue development	cell periphery cellular anatomical structure plasma membrane membrane
B [auth C], D	CLE41	protein binding binding receptor serine/threonine kinase binding signaling receptor binding	developmental process regulation of biological process cellular developmental process signaling biological regulation cell-cell signaling cell communication cell-cell signaling involved in cell fate commitment cell differentiation cellular process cell fate commitment phloem or xylem histogenesis xylem development anatomical structure development developmental process regulation of biological process cellular developmental process signaling biological regulation cell-cell signaling cell communication cell-cell signaling involved in cell fate commitment cell differentiation cellular process cell fate commitment phloem or xylem histogenesis xylem development anatomical structure development tissue development cell division multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation anatomical structure formation involved in morphogenesis shoot system development plant organ formation system development phloem development plant organ development maintenance of root meristem identity root morphogenesis stem cell population maintenance plant organ morphogenesis meristem development meristem maintenance maintenance of cell number maintenance of meristem identity root development root system development reproductive system development reproductive process procambium histogenesis developmental process involved in reproduction embryo development fruit development embryo development ending in seed dormancy seed development reproductive structure development post-embryonic development embryonic meristem development primary meristem tissue development meristem initiation axillary shoot meristem initiation anatomical structure arrangement meristem structural organization regulation of cellular process regulation of developmental process regulation of cell differentiation	cellular anatomical structure extracellular region apoplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B]	IPR017441	Protein kinase, ATP binding site	Binding Site
A, C [auth B]	IPR001611	Leucine-rich repeat	Repeat
A, C [auth B]	IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	Domain
A, C [auth B]	IPR050647	Plant LRR receptor-like serine/threonine-protein kinases	Family
A, C [auth B]	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, C [auth B]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, C [auth B]	IPR055414	Disease resistance R13L4/SHOC-2-like, LRR domain	Domain
A, C [auth B]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, C [auth B]	IPR000719	Protein kinase domain	Domain
A, C [auth B]	IPR008271	Serine/threonine-protein kinase, active site	Active Site
B [auth C], D	IPR037495	CLAVATA3/ESR (CLE)-related protein 41/42/44	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth C], D	HYP	Parent Component: PRO RESID: AA0030 PSI-MOD : 4-hydroxy-L-proline MOD:00039

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.