5ZOJ | pdb_00005zoj

Crystal structure of human SMAD2-MAN1 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5zojc_	All beta proteins	SMAD/FHA domain	SMAD/FHA domain	SMAD domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5zojb_	All beta proteins	SMAD/FHA domain	SMAD/FHA domain	SMAD domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d5zoja_	All beta proteins	SMAD/FHA domain	SMAD/FHA domain	SMAD domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	SMAD/FHA domain-like	8038261	3000137	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SMAD/FHA domain-like	8038261	3000137	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SMAD/FHA domain-like	8038261	3000137	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	RRM_1_9	e5zojE1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: RRM_1_9	ECOD (1.6)
D	RRM_1_9	e5zojD1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: RRM_1_9	ECOD (1.6)
C	MH2	e5zojC1	A: beta sandwiches	X: SMAD/FHA domain (From Topology)	H: SMAD/FHA domain (From Topology)	T: SMAD/FHA domain	F: MH2	ECOD (1.6)
B	MH2	e5zojB1	A: beta sandwiches	X: SMAD/FHA domain (From Topology)	H: SMAD/FHA domain (From Topology)	T: SMAD/FHA domain	F: MH2	ECOD (1.6)
A	MH2	e5zojA1	A: beta sandwiches	X: SMAD/FHA domain (From Topology)	H: SMAD/FHA domain (From Topology)	T: SMAD/FHA domain	F: MH2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.200.10	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
B	2.60.200.10	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
A	2.60.200.10	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF03166	MH2 domain (MH2)	MH2 domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E	Inner nuclear membrane protein Man1	DNA binding binding nucleic acid binding U1 snRNP binding ribonucleoprotein complex binding snRNP binding protein-containing complex binding	cellular response to stimulus negative regulation of transforming growth factor beta receptor signaling pathway regulation of cellular process cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus negative regulation of signaling signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication regulation of transforming growth factor beta receptor signaling pathway cellular response to stimulus negative regulation of transforming growth factor beta receptor signaling pathway regulation of cellular process cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus negative regulation of signaling signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication regulation of transforming growth factor beta receptor signaling pathway cellular response to endogenous stimulus negative regulation of cellular process signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling regulation of biological process cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus biological regulation negative regulation of signal transduction response to transforming growth factor beta regulation of response to stimulus transforming growth factor beta receptor signaling pathway regulation of cell communication cellular process response to growth factor transforming growth factor beta receptor superfamily signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway activin receptor signaling pathway negative regulation of activin receptor signaling pathway regulation of activin receptor signaling pathway negative regulation of cellular response to growth factor stimulus negative regulation of BMP signaling pathway BMP signaling pathway cellular response to BMP stimulus regulation of BMP signaling pathway response to BMP	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane organelle inner membrane cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane organelle inner membrane nuclear inner membrane
A, B, C	Mothers against decapentaplegic homolog 2	SMAD binding protein binding binding R-SMAD binding transforming growth factor beta receptor binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding co-SMAD binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding SMAD binding protein binding binding R-SMAD binding transforming growth factor beta receptor binding signaling receptor binding type I transforming growth factor beta receptor binding cytokine receptor binding co-SMAD binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding nucleic acid binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding cytoskeletal protein binding tau protein binding I-SMAD binding phosphatase binding enzyme binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity cation binding ion binding metal ion binding small molecule binding identical protein binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding RNA polymerase II transcription regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding disordered domain specific binding protein domain specific binding	developmental process multicellular organismal process digestive system development foregut morphogenesis tube development embryonic morphogenesis embryo development digestive tract development multicellular organism development anatomical structure morphogenesis tube morphogenesis embryonic foregut morphogenesis digestive tract morphogenesis anatomical structure development developmental process multicellular organismal process digestive system development foregut morphogenesis tube development embryonic morphogenesis embryo development digestive tract development multicellular organism development anatomical structure morphogenesis tube morphogenesis embryonic foregut morphogenesis digestive tract morphogenesis anatomical structure development system development mesoderm morphogenesis mesenchyme morphogenesis animal organ development mesenchyme development tissue development tissue morphogenesis paraxial mesoderm development animal organ morphogenesis paraxial mesoderm morphogenesis mesoderm development regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process embryonic pattern specification dorsal/ventral axis specification pattern specification process regionalization embryonic axis specification dorsal/ventral pattern formation zygotic specification of dorsal/ventral axis axis specification cell population proliferation response to sterol response to stimulus response to lipid response to alcohol response to chemical response to oxygen-containing compound response to cholesterol RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of DNA-templated transcription secondary palate development roof of mouth development cellular developmental process cell differentiation cell fate commitment regulation of developmental process negative regulation of developmental process negative regulation of biological process regulation of cell differentiation negative regulation of cellular process negative regulation of cell differentiation positive regulation of DNA-templated transcription transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process establishment of protein localization nitrogen compound transport transport signaling hormone secretion cell communication protein localization to extracellular region peptide secretion localization secretion by cell amide transport signal release regulation of biological quality intracellular protein localization secretion regulation of hormone levels establishment of protein localization to extracellular region cell-cell signaling export from cell protein secretion establishment of localization peptide transport protein transport peptide hormone secretion macromolecule localization hormone transport insulin secretion cellular response to stimulus cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway signal transduction enzyme-linked receptor protein signaling pathway trophoblast cell migration multi-multicellular organism process reproductive process ameboidal-type cell migration cell migration cell motility female pregnancy embryo implantation multi-organism reproductive process formation of primary germ layer gastrulation anatomical structure formation involved in morphogenesis mesoderm formation negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process heart development epithelium development circulatory system development pericardium development activin receptor signaling pathway nodal signaling pathway developmental growth growth organ growth regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of signal transduction regulation of transforming growth factor beta receptor signaling pathway regulation of signaling regulation of cellular response to transforming growth factor beta stimulus regulation of cellular response to growth factor stimulus regulation of response to stimulus regulation of cell communication regulation of epithelial to mesenchymal transition positive regulation of epithelial to mesenchymal transition positive regulation of developmental process positive regulation of cell differentiation regulation of multicellular organismal process epithelial to mesenchymal transition positive regulation of multicellular organismal process mesenchymal cell differentiation embryonic organ morphogenesis embryonic cranial skeleton morphogenesis skeletal system development cranial skeletal system development embryonic skeletal system development skeletal system morphogenesis embryonic organ development embryonic skeletal system morphogenesis respiratory tube development lung development respiratory system development response to hexose response to monosaccharide response to carbohydrate response to glucose positive regulation of cell communication positive regulation of signal transduction positive regulation of BMP signaling pathway positive regulation of response to stimulus BMP signaling pathway cellular response to BMP stimulus regulation of BMP signaling pathway positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway response to BMP positive regulation of signaling heart valve development aortic valve development heart valve morphogenesis semi-lunar valve development aortic valve morphogenesis ureteric bud development mesonephric epithelium development kidney epithelium development mesonephros development renal system development kidney development mesonephric tubule development pancreas development endocardial cushion morphogenesis heart morphogenesis endocardial cushion development pulmonary valve morphogenesis pulmonary valve development intracellular signal transduction SMAD protein signal transduction intracellular signaling cassette RNA processing regulatory ncRNA processing regulatory ncRNA-mediated gene silencing primary miRNA processing negative regulation of gene expression miRNA processing endoderm development endoderm formation epithelial cell differentiation neuroepithelial cell differentiation odontoblast differentiation columnar/cuboidal epithelial cell differentiation lateral mesoderm development determination of left/right asymmetry in lateral mesoderm determination of bilateral symmetry determination of left/right symmetry left/right pattern formation specification of symmetry ossification negative regulation of multicellular organismal process regulation of ossification negative regulation of ossification post-embryonic development anterior/posterior pattern specification	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex RNA polymerase II transcription regulator complex membrane-bounded organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle activin responsive factor complex intracellular organelle organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex RNA polymerase II transcription regulator complex membrane-bounded organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle activin responsive factor complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heteromeric SMAD protein complex SMAD protein complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen homomeric SMAD protein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E	IPR003887	LEM domain	Domain
D, E	IPR034394	MAN1, RNA recognition motif	Domain
D, E	IPR052277	Inner Nuclear Membrane ESCRT-Associated Protein	Family
D, E	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
D, E	IPR011015	LEM/LEM-like domain superfamily	Homologous Superfamily
D, E	IPR018996	Man1/Src1-like, C-terminal	Domain
D, E	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
D, E	IPR041885	MAN1, winged-helix domain	Homologous Superfamily
A, B, C	IPR036578	SMAD MH1 domain superfamily	Homologous Superfamily
A, B, C	IPR017855	SMAD-like domain superfamily	Homologous Superfamily
A, B, C	IPR013019	MAD homology, MH1	Domain
A, B, C	IPR013790	Dwarfin	Family
A, B, C	IPR003619	MAD homology 1, Dwarfin-type	Domain
A, B, C	IPR008984	SMAD/FHA domain superfamily	Homologous Superfamily
A, B, C	IPR001132	SMAD domain, Dwarfin-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D, E	Pharos: Q9Y2U8	Buschke-Ollendorff syndrome melorheostosis 12q14 microdeletion syndrome melorheostosis with osteopoikilosis intellectual disability lung cancer osteopoikilosis osteosarcoma subependymal giant cell astrocytoma isolated osteopoikilosis Osteopoikilosis (disorder) ovarian cancer vascular disease large cell medulloblastoma psoriasis
A, B, C	Pharos: Q15796	Liver Cirrhosis, Experimental acromicric dysplasia lymphoplasmacytic lymphoma ovarian cancer primitive neuroectodermal tumor subependymal giant cell astrocytoma cancer colorectal cancer connective tissue disease hepatitis kidney disease lung cancer Marfan syndrome pituitary cancer psoriasis Liver Cirrhosis, Experimental acromicric dysplasia lymphoplasmacytic lymphoma ovarian cancer primitive neuroectodermal tumor subependymal giant cell astrocytoma cancer colorectal cancer connective tissue disease hepatitis kidney disease lung cancer Marfan syndrome pituitary cancer psoriasis amyotrophic lateral sclerosis thoracic aortic aneurysm colorectal carcinoma dermatomyositis lung disease medulloblastoma plasma cell myeloma right atrial isomerism breast cancer geleophysic dysplasia holoprosencephaly

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.