Annotations: 5ZNM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Colicin D/E5 nuclease domain	8035540	3001283	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Colicin D/E5 nuclease domain	8035540	3001283	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF06958	e5znmA1	A: beta complex topology	X: Cloacin translocation domain (From Topology)	H: Cloacin translocation domain (From Topology)	T: Cloacin translocation domain	F: PF06958	ECOD (1.6)
A	PF11429	e5znmA2	A: a+b two layers	X: Microbial ribonucleases-like	H: Colicin D nuclease domain (From Topology)	T: Colicin D nuclease domain	F: PF11429	ECOD (1.6)
B	PF06958	e5znmB2	A: beta complex topology	X: Cloacin translocation domain (From Topology)	H: Cloacin translocation domain (From Topology)	T: Cloacin translocation domain	F: PF06958	ECOD (1.6)
B	PF11429	e5znmB1	A: a+b two layers	X: Microbial ribonucleases-like	H: Colicin D nuclease domain (From Topology)	T: Colicin D nuclease domain	F: PF11429	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF06958	S-type Pyocin (Pyocin_S)	S-type Pyocin	-	Family
A, B	PF11429	Colicin D (Colicin_D)	Colicin D	Colicin D is a tRNase which kills sensitive E.coli cells via a specific tRNA cleavage. It targets the four isoaccepting tRNAs for Arg and cleaves the phosphodiester bond between positions 38 and 39 at the 3' junction of the anticodon stem and the loo ...	Colicin D is a tRNase which kills sensitive E.coli cells via a specific tRNA cleavage. It targets the four isoaccepting tRNAs for Arg and cleaves the phosphodiester bond between positions 38 and 39 at the 3' junction of the anticodon stem and the loop [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Colicin-D	nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity hydrolase activity catalytic activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to external stimulus response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	intracellular anatomical structure extrachromosomal circular DNA cellular anatomical entity extrachromosomal DNA

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR024440	Colicin D, C-terminal	Domain
A, B	IPR024575	Cloacin/colicin	Family
A, B	IPR038233	Colicin D/E5 nuclease domain superfamily	Homologous Superfamily
A, B	IPR016128	Pyosin/cloacin translocation domain	Domain
A, B	IPR036302	Pyosin/cloacin translocation domain superfamily	Homologous Superfamily
A, B	IPR037178	Colicin D, C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.