5YPZ | pdb_00005ypz

Crystal structure of minor pilin CofB from CFA/III complexed with N-terminal peptide fragment of CofJ

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF07834	e5ypzA1	A: beta sandwiches	X: Agglutinin HPA-like	H: CofB C-terminal domain (From Topology)	T: CofB C-terminal domain	F: EUF07834	ECOD (1.6)
A	EUF07873	e5ypzA3	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: EUF07873	ECOD (1.6)
A	EUF08317	e5ypzA2	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: EUF08317	ECOD (1.6)
B	EUF07834	e5ypzB1	A: beta sandwiches	X: Agglutinin HPA-like	H: CofB C-terminal domain (From Topology)	T: CofB C-terminal domain	F: EUF07834	ECOD (1.6)
B	EUF07873	e5ypzB3	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: EUF07873	ECOD (1.6)
B	EUF08317	e5ypzB2	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: EUF08317	ECOD (1.6)
C	EUF07834	e5ypzC1	A: beta sandwiches	X: Agglutinin HPA-like	H: CofB C-terminal domain (From Topology)	T: CofB C-terminal domain	F: EUF07834	ECOD (1.6)
C	EUF07873	e5ypzC2	A: beta duplicates or obligate multimers	X: Phage tail fiber protein trimerization domain (From Topology)	H: Phage tail fiber protein trimerization domain (From Topology)	T: Phage tail fiber protein trimerization domain	F: EUF07873	ECOD (1.6)
C	EUF08317	e5ypzC3	A: a+b two layers	X: Pili subunits (From Topology)	H: Pili subunits (From Topology)	T: Pili subunits	F: EUF08317	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	CofB	-	-	cellular anatomical structure membrane
D, E, F	CofJ	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR053972	CofB, C-terminal domain	Domain
A, B, C	IPR053971	CofB-like, beta-repeat domain	Domain
A, B, C	IPR048688	CofB-like, pilin domain	Domain
A, B, C	IPR012902	Prokaryotic N-terminal methylation site	PTM
D, E, F	IPR054068	CofJ	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.