Annotations: 5YDY

NMR structure of YAP1-2 WW2 domain with LATS1 PPxY motif complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5ydyA1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleotidyltransferase	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00397	WW domain (WW)	WW domain	The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	WW2 domain and PPxY motif complex	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding protein binding proline-rich region binding transcription regulator activity transcription coregulator activity RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding protein binding proline-rich region binding transcription regulator activity transcription coregulator activity RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding chromatin binding transcription coactivator activity transcription corepressor activity transcription factor binding DNA-binding transcription factor binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process multicellular organismal process regulation of multicellular organismal development regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process multicellular organismal process regulation of multicellular organismal development regulation of biological process regulation of cellular process regulation of developmental process cellular developmental process biological regulation cell development regulation of neurogenesis regulation of cell differentiation nervous system development regulation of cell development regulation of nervous system development multicellular organism development neurogenesis cell differentiation anatomical structure development regulation of multicellular organismal process animal gross anatomical part developmental process system development response to ketone response to lipid response to hormone response to steroid hormone response to chemical response to endogenous stimulus response to progesterone response to oxygen-containing compound regulation of biosynthetic process positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process regulation of growth positive regulation of cell population proliferation regulation of cardiac muscle tissue growth developmental growth positive regulation of developmental process positive regulation of cardiac muscle cell proliferation regulation of organ growth regulation of heart growth regulation of cardiac muscle cell proliferation muscle cell proliferation cardiac muscle tissue growth muscle tissue development positive regulation of developmental growth positive regulation of heart growth striated muscle cell proliferation heart growth cell population proliferation positive regulation of organ growth tissue development regulation of cell population proliferation positive regulation of cardiac muscle tissue growth positive regulation of multicellular organismal process cardiac muscle cell proliferation organ growth striated muscle tissue development heart development regulation of developmental growth cardiac muscle tissue development growth animal organ development circulatory system development positive regulation of growth hippo signaling signaling negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication regulation of intracellular signal transduction negative regulation of cellular process signal transduction regulation of signaling negative regulation of response to stimulus negative regulation of hippo signaling negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of hippo signaling tissue regeneration cardiac muscle tissue regeneration regeneration epithelium development digestive system development intestinal epithelial cell differentiation tube development intestinal epithelial cell development digestive tract development epithelial cell differentiation epithelial cell development columnar/cuboidal epithelial cell development columnar/cuboidal epithelial cell differentiation RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of epithelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death epithelial cell apoptotic process negative regulation of apoptotic process negative regulation of epithelial cell apoptotic process apoptotic process programmed cell death regulation of cellular component organization positive regulation of cell growth regulation of cell growth cell growth cellular component organization cellular component organization or biogenesis fat cell differentiation negative regulation of developmental process negative regulation of fat cell differentiation negative regulation of cell differentiation regulation of fat cell differentiation cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly regulation of localization regulation of protein localization positive regulation of protein localization to nucleus regulation of protein localization to nucleus protein localization to nucleus localization macromolecule localization protein localization to organelle positive regulation of protein localization intracellular protein localization positive regulation of keratinocyte proliferation positive regulation of epithelial cell proliferation regulation of keratinocyte proliferation regulation of epithelial cell proliferation epithelial cell proliferation keratinocyte proliferation polarized epithelial cell differentiation morphogenesis of an epithelium tissue morphogenesis anatomical structure morphogenesis morphogenesis of a polarized epithelium cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus response to ionizing radiation cellular response to gamma radiation response to radiation response to abiotic stimulus cellular response to abiotic stimulus response to gamma radiation heart process system process circulatory system process cell projection organization negative regulation of organelle assembly plasma membrane bounded cell projection assembly negative regulation of plasma membrane bounded cell projection assembly cilium assembly negative regulation of cell projection organization cilium organization organelle assembly plasma membrane bounded cell projection organization negative regulation of cellular component organization regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of organelle organization regulation of plasma membrane bounded cell projection assembly organelle organization regulation of cilium assembly negative regulation of organelle organization regulation of organelle assembly negative regulation of cilium assembly cell projection assembly regulation of plasma membrane bounded cell projection organization regulation of stem cell proliferation stem cell proliferation interleukin-6-mediated signaling pathway response to interleukin-6 cell surface receptor signaling pathway cellular response to interleukin-6 response to cytokine cytokine-mediated signaling pathway response to peptide cellular response to cytokine stimulus regulation of osteoblast differentiation osteoblast differentiation positive regulation of osteoblast differentiation ossification positive regulation of cell differentiation wound healing response to wounding multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis positive regulation of cell communication positive regulation of signal transduction positive regulation of response to stimulus Notch signaling pathway regulation of Notch signaling pathway positive regulation of Notch signaling pathway positive regulation of signaling negative regulation of gene expression	cell-cell junction cellular anatomical structure anchoring junction cell junction intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen cell-cell junction cellular anatomical structure anchoring junction cell junction intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle membraneless organelle nuclear lumen cell periphery plasma membrane membrane nucleoplasm apical junction complex bicellular tight junction tight junction RNA polymerase II transcription regulator complex protein-containing complex nuclear protein-containing complex transcription regulator complex TEAD-YAP complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036020	WW domain superfamily	Homologous Superfamily
A	IPR053819	TEAD interacting region 3, omega loop	Conserved Site
A	IPR051583	Transcriptional coactivator YAP1/WWTR1	Family
A	IPR001202	WW domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P46937	uveal coloboma-cleft lip and palate-intellectual disability polycystic ovary syndrome breast carcinoma neuroblastoma Neoplasm Metastasis breast cancer coloboma ovarian cancer head and neck squamous cell carcinoma cancer epithelioid hemangioendothelioma hepatocellular carcinoma invasive ductal breast carcinoma lung carcinoma malignant pancreatic neoplasm uveal coloboma-cleft lip and palate-intellectual disability polycystic ovary syndrome breast carcinoma neuroblastoma Neoplasm Metastasis breast cancer coloboma ovarian cancer head and neck squamous cell carcinoma cancer epithelioid hemangioendothelioma hepatocellular carcinoma invasive ductal breast carcinoma lung carcinoma malignant pancreatic neoplasm amyotrophic lateral sclerosis medulloblastoma brain cancer osteosarcoma pancreatic ductal adenocarcinoma colorectal cancer ductal breast carcinoma in situ glioblastoma intellectual disability subependymal giant cell astrocytoma juvenile dermatomyositis malignant ependymoma atypical teratoid rhabdoid tumor migraine disorder coloboma, ocular, autosomal dominant Pick disease Emery-Dreifuss muscular dystrophy spina bifida interstitial lung disease triple-negative breast carcinoma large cell medulloblastoma malignant glioma myopathy ovarian neoplasm pituitary cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.