5Y2J | pdb_00005y2j

Crystal structure of the oligomerization domain of NSP4 from rotavirus strain MF66

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5y2jd1	Coiled coil proteins	Parallel coiled-coil	Rotavirus nonstructural proteins	NSP4 oligomerization domain	automated matches	(Bovine rotavirus G10 ) [TaxId: 195477 ],	SCOPe (2.08)
D	d5y2jd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bovine rotavirus G10 ) [TaxId: 195477 ],	SCOPe (2.08)
C	d5y2jc1	Coiled coil proteins	Parallel coiled-coil	Rotavirus nonstructural proteins	NSP4 oligomerization domain	automated matches	(Bovine rotavirus G10 ) [TaxId: 195477 ],	SCOPe (2.08)
C	d5y2jc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Bovine rotavirus G10 ) [TaxId: 195477 ],	SCOPe (2.08)
B	d5y2jb_	Coiled coil proteins	Parallel coiled-coil	Rotavirus nonstructural proteins	NSP4 oligomerization domain	automated matches	(Bovine rotavirus G10 ) [TaxId: 195477 ],	SCOPe (2.08)
A	d5y2ja_	Coiled coil proteins	Parallel coiled-coil	Rotavirus nonstructural proteins	NSP4 oligomerization domain	automated matches	(Bovine rotavirus G10 ) [TaxId: 195477 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Rotavirus nonstructural proteins	8072077	3001522	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rotavirus nonstructural proteins	8072077	3001522	SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.5.430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.20.5.430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nonstructural protein 4	passive transmembrane transporter activity channel activity transporter activity transmembrane transporter activity cation binding ion binding binding metal ion binding small molecule binding toxin activity	symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host autophagy modulation of process of another organism symbiont-mediated activation of host autophagy biological process involved in interaction with host biological process involved in symbiotic interaction transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host autophagy modulation of process of another organism symbiont-mediated activation of host autophagy biological process involved in interaction with host biological process involved in symbiotic interaction transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization viral process	cellular anatomical structure membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell rough endoplasmic reticulum membrane host cell membrane other organism part host cell rough endoplasmic reticulum host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part cellular anatomical structure membrane host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell rough endoplasmic reticulum membrane host cell membrane other organism part host cell rough endoplasmic reticulum host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane extracellular region host caveola

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002107	Rotavirus non-structural protein 4	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.