5XZC
Cryo-EM structure of p300-p53 protein complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Bromodomain | 8084259 | 3001843 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | p53-like transcription factors | 8036866 | 3000758 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | p53 tetramerization domain | 8037626 | 3000414 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | p53-like transcription factors | 8036866 | 3000758 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | p53 tetramerization domain | 8037626 | 3000414 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | p53-like transcription factors | 8036866 | 3000758 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | p53 tetramerization domain | 8037626 | 3000414 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | p53 tetramerization domain | 8037626 | 3000414 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | p53-like transcription factors | 8036866 | 3000758 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Bromodomain | e5xzcA2 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
A | HAT_KAT11 | e5xzcA1 | A: a+b three layers | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) (From Topology) | T: Acyl-CoA N-acyltransferases (Nat) | F: HAT_KAT11 | ECOD (1.6) |
A | DUF902 | e5xzcA4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: DUF902 | ECOD (1.6) |
A | PHD_CBP | e5xzcA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: PHD_CBP | ECOD (1.6) |
B | P53 | e5xzcB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: P53 | ECOD (1.6) |
B | P53_tetramer | e5xzcB2 | A: alpha duplicates or obligate multimers | X: p53 tetramerization domain (From Topology) | H: p53 tetramerization domain (From Topology) | T: p53 tetramerization domain | F: P53_tetramer | ECOD (1.6) |
D | P53 | e5xzcD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: P53 | ECOD (1.6) |
D | P53_tetramer | e5xzcD2 | A: alpha duplicates or obligate multimers | X: p53 tetramerization domain (From Topology) | H: p53 tetramerization domain (From Topology) | T: p53 tetramerization domain | F: P53_tetramer | ECOD (1.6) |
C | P53 | e5xzcC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: P53 | ECOD (1.6) |
C | P53_tetramer | e5xzcC2 | A: alpha duplicates or obligate multimers | X: p53 tetramerization domain (From Topology) | H: p53 tetramerization domain (From Topology) | T: p53 tetramerization domain | F: P53_tetramer | ECOD (1.6) |
E | P53 | e5xzcE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Common fold of diphtheria toxin/transcription factors/cytochrome f | F: P53 | ECOD (1.6) |
E | P53_tetramer | e5xzcE2 | A: alpha duplicates or obligate multimers | X: p53 tetramerization domain (From Topology) | H: p53 tetramerization domain (From Topology) | T: p53 tetramerization domain | F: P53_tetramer | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08214 | Histone acetylation protein (HAT_KAT11) | Histone acetylation protein | Histone acetylation is required in many cellular processes including transcription, DNA repair, and chromatin assembly. This family contains the fungal KAT11 protein (previously known as RTT109) which is required for H3K56 acetylation. Loss of KAT11 ... | Domain | |
PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain | |
PF06001 | CREB-binding protein/p300, atypical RING domain (RING_CBP-p300) | CREB-binding protein/p300, atypical RING domain | CBP (CREB-binding protein) and p300 (also known as CREBBP or KAT3A and EP300 or KAT3B, respectively) are two histone acetyltransferases (HATs) that associate with and acetylate transcriptional regulators and chromatin. The catalytic core of animal CB ... | Domain | |
PF00870 | P53 DNA-binding domain (P53) | P53 DNA-binding domain | This family contains one anomalous member, viz: Zea mays (Q6JAD8). This sequence is identical to human P53 and would appear to be a a human contaminant within the Zea mays sampling effort. | Domain |