5XW5 | pdb_00005xw5

Crystal structure of budding yeast Cdc14p (C283S) bound to a Swi6p phosphopeptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DSPc	e5xw5B1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F: DSPc	ECOD (1.6)
B	DSPn	e5xw5B2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F: DSPn	ECOD (1.6)
A	DSPc	e5xw5A1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F: DSPc	ECOD (1.6)
A	DSPn	e5xw5A2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: (Phosphotyrosine protein) phosphatases II	F: DSPn	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14671	Dual specificity protein phosphatase, N-terminal half (DSPn)	Dual specificity protein phosphatase, N-terminal half	The active core of the dual specificity protein phosphatase is made up of two globular domains both with the DSP-like fold. This family represents the N-terminal half of the core. These domains are arranged in tandem, and are associated via an extens ...	The active core of the dual specificity protein phosphatase is made up of two globular domains both with the DSP-like fold. This family represents the N-terminal half of the core. These domains are arranged in tandem, and are associated via an extensive interface to form a single globular whole. The conserved PTP signature motif (Cys-[X]5-Arg) that defines the catalytic centre of all PTP-family members is located within the C-terminal domain, family DSPc, Pfam:PF00782. Although the centre of the catalytic site is formed from DSPc, two loops from the N-terminal domain, DSPn, also contribute to the catalytic site, facilitating peptide substrate specificity [1].	Domain
A, B	PF00782	Dual specificity phosphatase, catalytic domain (DSPc)	Dual specificity phosphatase, catalytic domain	Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C	Regulatory protein SWI6	DNA binding binding nucleic acid binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process cellular response to stimulus cellular response to heat response to stimulus cellular response to stress response to stress response to heat response to abiotic stimulus response to temperature stimulus positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of organelle organization positive regulation of reciprocal meiotic recombination regulation of DNA recombination homologous recombination regulation of reproductive process reciprocal homologous recombination positive regulation of DNA recombination regulation of meiotic cell cycle regulation of cell cycle process meiotic cell cycle DNA recombination positive regulation of nuclear division DNA metabolic process regulation of organelle organization reciprocal meiotic recombination meiosis I cell cycle process positive regulation of DNA metabolic process positive regulation of meiotic nuclear division regulation of DNA metabolic process regulation of cellular component organization positive regulation of cellular component organization sexual reproduction reproductive process meiotic cell cycle process cellular component organization meiosis I regulation of reciprocal meiotic recombination positive regulation of cell cycle process meiotic nuclear division cellular component organization or biogenesis regulation of cell cycle positive regulation of reproductive process organelle fission positive regulation of meiotic cell cycle positive regulation of cell cycle regulation of meiotic nuclear division organelle organization nuclear division regulation of nuclear division	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle MBF transcription complex cellular anatomical structure organelle cytoplasm SBF transcription complex
A, B	Tyrosine-protein phosphatase CDC14	phosphoric ester hydrolase activity phosphoprotein phosphatase activity protein serine/threonine phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity protein tyrosine phosphatase activity	cellular process cell cycle mitotic cell cycle regulation of cytokinesis regulation of biological process regulation of cellular process positive regulation of cell division regulation of cell cycle process biological regulation positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis cellular process cell cycle mitotic cell cycle regulation of cytokinesis regulation of biological process regulation of cellular process positive regulation of cell division regulation of cell cycle process biological regulation positive regulation of biological process cytokinesis positive regulation of cell cycle regulation of cell division positive regulation of cytokinesis positive regulation of cell cycle process cell division regulation of cell cycle positive regulation of cellular process cell cycle process regulation of cell cycle phase transition cell cycle phase transition exit from mitosis cellular component organization regulation of mitotic cell cycle cellular component organization or biogenesis mitotic nuclear division organelle fission regulation of mitotic cell cycle phase transition nuclear division organelle organization mitotic cell cycle process regulation of exit from mitosis mitotic cell cycle phase transition chromosome segregation rDNA chromatin condensation nucleolar chromatin organization chromosome organization nucleus organization nucleolus organization chromatin organization chromosome condensation cellular component disassembly spindle disassembly sexual reproduction reproductive process microtubule cytoskeleton organization meiotic cell cycle meiotic spindle organization meiotic cell cycle process meiotic spindle disassembly organelle disassembly microtubule-based process cytoskeleton organization spindle organization catabolic process autophagy metabolic process autophagy of mitochondrion process utilizing autophagic mechanism meiotic nuclear division cellular response to stimulus response to osmotic stress response to stimulus cellular response to chemical stress cellular response to osmotic stress cellular response to environmental stimulus cellular response to chemical stimulus cellular response to stress response to stress response to chemical response to abiotic stimulus cellular response to abiotic stimulus positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization macroautophagy positive regulation of vacuole organization autophagosome organization regulation of autophagy cellular component biogenesis positive regulation of metabolic process cellular component assembly positive regulation of autophagosome assembly positive regulation of macroautophagy positive regulation of autophagy autophagosome assembly organelle assembly vacuole organization positive regulation of cellular component biogenesis regulation of autophagosome assembly regulation of catabolic process regulation of vacuole organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of catabolic process regulation of macroautophagy regulation of organelle assembly regulation of metabolic process positive regulation of organelle assembly assembly of actomyosin apparatus involved in cytokinesis mitotic actomyosin contractile ring assembly regulation of cytokinesis, actomyosin contractile ring assembly regulation of mitotic cytokinetic process mitotic cytokinetic process regulation of mitotic actomyosin contractile ring assembly regulation of mitotic cytokinesis cortical actin cytoskeleton organization actin filament-based process positive regulation of cytokinesis, actomyosin contractile ring assembly assembly of actomyosin apparatus involved in mitotic cytokinesis actomyosin structure organization cortical cytoskeleton organization positive regulation of cytoskeleton organization regulation of cytokinetic process regulation of cytoskeleton organization regulation of actin filament-based process cytoskeleton-dependent cytokinesis positive regulation of mitotic cytokinesis actomyosin contractile ring assembly mitotic cytokinesis positive regulation of mitotic actomyosin contractile ring assembly positive regulation of mitotic cytokinetic process actin cytoskeleton organization regulation of actomyosin structure organization cytokinetic process regulation of actin cytoskeleton organization actomyosin contractile ring organization negative regulation of biological process negative regulation of cellular process chromatin remodeling rDNA heterochromatin formation negative regulation of macromolecule metabolic process regulation of biosynthetic process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process facultative heterochromatin formation negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process macromolecule metabolic process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process negative regulation of transcription by RNA polymerase I RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase I negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of DNA-templated transcription regulation of transcription by RNA polymerase I primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of DNA-templated transcription negative regulation of RNA metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen cytoskeleton spindle spindle pole microtubule cytoskeleton cytoplasm mitotic spindle microtubule organizing center spindle pole body mitotic spindle pole body RENT complex protein-containing complex nuclear protein-containing complex chromatin silencing complex new mitotic spindle pole body cellular bud neck cellular bud site of polarized growth

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C	IPR002110	Ankyrin repeat	Repeat
C	IPR051642	Regulatory protein SWI6-like	Family
C	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
C	IPR040822	Swi6, N-terminal	Domain
A, B	IPR044506	Dual-specificity phosphatase CDC14, C-terminal	Domain
A, B	IPR050561	Protein Tyrosine Phosphatase	Family
A, B	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A, B	IPR029260	Dual specificity/tyrosine protein phosphatase, N-terminal	Domain
A, B	IPR000340	Dual specificity phosphatase, catalytic domain	Domain
A, B	IPR016130	Protein-tyrosine phosphatase, active site	Active Site
A, B	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A, B	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
A, B	IPR020422	Dual specificity protein phosphatase domain	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.