5XHF | pdb_00005xhf

Crystal structure of Trastuzumab Fab fragment bearing p-azido-L-phenylalanine


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DATP-synt_VA_Ce5xhfD1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_VA_CECOD (v294.1)
BKu_Ne5xhfB1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ku_NECOD (v294.1)
CKu_Ne5xhfC1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Ku_NECOD (v294.1)
AATP-synt_VA_Ce5xhfA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_VA_CECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B, D
Heavy ChainIGHV3 --SAbDab (2026-03-27)
A, C
Light ChainIGKV1 Kappa-SAbDab (2026-03-27)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
B, D
Coprelotamab ERBB2/CD340/HER2, SIRPA, CD3E, TNFRSF9/CD137/4-1BBTherapeutic SAbDab (2026-03-27)
A, C
Coprelotamab ERBB2/CD340/HER2, CD3E, SIRPA, TNFRSF9/CD137/4-1BBTherapeutic SAbDab (2026-03-27)