5X0W | pdb_00005x0w

Molecular mechanism for the binding between Sharpin and HOIP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth G]	SCOP2B Superfamily	UBA-like	8092515	3001235	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	UBA-like	8092498	3001235	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	UBA-like	8092497	3001235	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	UBA-like	8092515	3001235	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	UBA-like	8092498	3001235	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	UBA-like	8092497	3001235	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	UBA-like	8092497	3001235	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	UBA-like	8092515	3001235	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	UBA-like	8092515	3001235	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	UBA-like	8092497	3001235	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Jacalin	e5x0wH1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
G [auth F]	Jacalin	e5x0wF1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
F [auth D]	Jacalin	e5x0wD1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
E [auth B]	Jacalin	e5x0wB1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
D [auth G]	Jacalin	e5x0wG1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
C [auth E]	Jacalin	e5x0wE1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
B [auth C]	Jacalin	e5x0wC1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)
A	Jacalin	e5x0wA1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Jacalin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
G [auth F]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
F [auth D]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
E [auth B]	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth C], C [auth E], D [auth G]	PF16678	HOIP UBA domain pair (UBA_HOIP)	HOIP UBA domain pair	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth B], F [auth D], G [auth F], H	Sharpin	protein binding binding ubiquitin binding ubiquitin-like protein binding protein-macromolecule adaptor activity molecular adaptor activity polyubiquitin modification-dependent protein binding modification-dependent protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity protein binding binding ubiquitin binding ubiquitin-like protein binding protein-macromolecule adaptor activity molecular adaptor activity polyubiquitin modification-dependent protein binding modification-dependent protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein linear polyubiquitination protein modification by small protein conjugation or removal cellular response to stimulus protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein linear polyubiquitination protein modification by small protein conjugation or removal cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling cellular component disassembly cellular component organization execution phase of apoptosis cellular component disassembly involved in execution phase of apoptosis apoptotic nuclear changes apoptotic process cellular component organization or biogenesis cell death programmed cell death cell surface receptor signaling pathway regulation of CD40 signaling pathway CD40 signaling pathway negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction negative regulation of cell communication negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction regulation of defense response regulation of response to external stimulus negative regulation of inflammatory response defense response response to external stimulus regulation of inflammatory response response to stress negative regulation of response to external stimulus regulation of response to stress negative regulation of defense response inflammatory response defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external biotic stimulus response to biotic stimulus catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process developmental process multicellular organismal process epithelium development keratinization epidermal cell differentiation cellular developmental process epidermis development animal organ development tissue development epithelial cell differentiation skin development cell differentiation keratinocyte differentiation anatomical structure development organelle organization mitochondrion organization response to cytokine cytokine-mediated signaling pathway cellular response to tumor necrosis factor tumor necrosis factor-mediated signaling pathway cellular response to cytokine stimulus regulation of tumor necrosis factor-mediated signaling pathway regulation of cytokine-mediated signaling pathway response to peptide regulation of response to cytokine stimulus response to chemical response to tumor necrosis factor	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol LUBAC complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex synapse cell junction
A, B [auth C], C [auth E], D [auth G]	E3 ubiquitin-protein ligase RNF31	polyubiquitin modification-dependent protein binding protein binding binding K48-linked polyubiquitin modification-dependent protein binding modification-dependent protein binding ubiquitin binding ubiquitin-like protein binding linear polyubiquitin binding K63-linked polyubiquitin modification-dependent protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity polyubiquitin modification-dependent protein binding protein binding binding K48-linked polyubiquitin modification-dependent protein binding modification-dependent protein binding ubiquitin binding ubiquitin-like protein binding linear polyubiquitin binding K63-linked polyubiquitin modification-dependent protein binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding identical protein binding	protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein linear polyubiquitination protein modification by small protein conjugation or removal cellular response to stimulus protein polyubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein linear polyubiquitination protein modification by small protein conjugation or removal cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction positive regulation of canonical NF-kappaB signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of response to stimulus regulation of cell communication regulation of canonical NF-kappaB signal transduction positive regulation of signaling immune response-regulating cell surface receptor signaling pathway immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process negative regulation of canonical NF-kappaB signal transduction negative regulation of cell communication negative regulation of cellular process negative regulation of response to stimulus negative regulation of signal transduction defense response to bacterium biological process involved in interspecies interaction between organisms response to other organism defense response response to bacterium response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus regulation of defense response regulation of response to biotic stimulus catabolic process regulation of response to external stimulus macroautophagy positive regulation of xenophagy autophagy xenophagy regulation of autophagy positive regulation of metabolic process positive regulation of response to external stimulus regulation of response to stress positive regulation of macroautophagy process utilizing autophagic mechanism positive regulation of autophagy regulation of xenophagy regulation of catabolic process positive regulation of catabolic process regulation of macroautophagy defense response to other organism positive regulation of defense response regulation of metabolic process CD40 signaling pathway necroptotic process negative regulation of programmed cell death negative regulation of necroptotic process programmed necrotic cell death regulation of programmed cell death cell death regulation of necroptotic process negative regulation of programmed necrotic cell death regulation of programmed necrotic cell death programmed cell death	cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex signaling receptor complex CD40 receptor complex intracellular anatomical structure cytoplasm cytosol LUBAC complex cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex signaling receptor complex CD40 receptor complex intracellular anatomical structure cytoplasm cytosol LUBAC complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex cytoplasmic side of plasma membrane cytoplasmic side of membrane side of membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth B], F [auth D], G [auth F], H	IPR011993	PH-like domain superfamily	Homologous Superfamily
E [auth B], F [auth D], G [auth F], H	IPR051628	Linear Ubiquitination-Associated E3 Ligases	Family
E [auth B], F [auth D], G [auth F], H	IPR031912	Sharpin, PH domain	Domain
E [auth B], F [auth D], G [auth F], H	IPR057468	HOIL-1/Sharpin, LUBAC thetering domain	Domain
E [auth B], F [auth D], G [auth F], H	IPR036443	Zinc finger, RanBP2-type superfamily	Homologous Superfamily
E [auth B], F [auth D], G [auth F], H	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
E [auth B], F [auth D], G [auth F], H	IPR001876	Zinc finger, RanBP2-type	Domain
A, B [auth C], C [auth E], D [auth G]	IPR002867	IBR domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR044066	TRIAD supradomain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR036339	PUB-like domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR026254	E3 ubiquitin-protein ligase RNF31-like	Family
A, B [auth C], C [auth E], D [auth G]	IPR047541	E3 ubiquitin-protein ligase RNF31-like, modified RING finger, HC subclass	Domain
A, B [auth C], C [auth E], D [auth G]	IPR057426	E3 ubiquitin-protein ligase RNF31, third UBA domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR032065	E3 ubiquitin-protein ligase RNF31, UBA-like domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR047539	E3 ubiquitin-protein ligase RNF31, UBA domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR015940	Ubiquitin-associated domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR036443	Zinc finger, RanBP2-type superfamily	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A, B [auth C], C [auth E], D [auth G]	IPR018997	PUB domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR047542	E3 ubiquitin-protein ligase RNF31-like, Rcat domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B [auth C], C [auth E], D [auth G]	IPR047543	E3 ubiquitin-protein ligase RNF31-like, Bbox1 zinc finger	Domain
A, B [auth C], C [auth E], D [auth G]	IPR040641	E3 ubiquitin-protein ligase RNF31, PUB domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR047540	E3 ubiquitin-protein ligase RNF31-like, BRcat domain	Domain
A, B [auth C], C [auth E], D [auth G]	IPR001876	Zinc finger, RanBP2-type	Domain
A, B [auth C], C [auth E], D [auth G]	IPR041031	RNF31, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth B], F [auth D], G [auth F], H	Pharos: Q9H0F6	dermatitis hypereosinophilic syndrome bipolar I disorder Eosinophilia, Tropical Sjogren syndrome
A, B [auth C], C [auth E], D [auth G]	Pharos: Q96EP0	prostate cancer Prostatic Neoplasms