Crystal Structure of RSV F in complex with 5C4 Fab
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth N] | ATP-synt_Eps | e5w23N1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| G [auth M] | ATP-synt_Eps | e5w23M1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| E [auth L] | RuBisCO_large_N | e5w23L1 | A: a/b three-layered sandwiches | X: Protein kinase/SAICAR synthase/ATP-grasp | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Undecaprenyl diphosphate synthase | F: RuBisCO_large_N | ECOD (v294.1) |
| D [auth H] | ATP-synt_Eps | e5w23H1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| F [auth I] | ATP-synt_Eps | e5w23I1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| H [auth J] | ATP-synt_Eps | e5w23J1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| C | RuBisCO_large_N | e5w23C1 | A: a/b three-layered sandwiches | X: Protein kinase/SAICAR synthase/ATP-grasp | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Undecaprenyl diphosphate synthase | F: RuBisCO_large_N | ECOD (v294.1) |
| B | ATP-synt_Eps | e5w23B1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
| A | ATP-synt_Eps | e5w23A1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: ATP-synt_Eps | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| I [auth N] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| G [auth M] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| E [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| D [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| F [auth I] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| H [auth J] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| E [auth L], G [auth M], I [auth N] | Fab 5C4 | L-KAPPA | Mus musculus (house mouse) | IGKV3-10*01, IGKJ4*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-2C_KAPPA | IMGT (202612-0) |
| D [auth H], F [auth I], H [auth J] | Fab 5C4 | VH-CH1 | Mus musculus (house mouse) | IGHV14-3*02, IGHJ4*01, IGHG2C*01, IGHG2C*02, IGHG2C*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-2C_KAPPA | IMGT (202612-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| E [auth L], G [auth M], I [auth N] | Light Chain | IGKV3 | Kappa | fusion glycoprotein f0 | SAbDab (2026-03-27) |
| D [auth H], F [auth I], H [auth J] | Heavy Chain | IGHV14 | - | fusion glycoprotein f0 | SAbDab (2026-03-27) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000776 | Precursor fusion glycoprotein F0, Paramyxoviridae | Family |














