5W23 | pdb_00005w23

Crystal Structure of RSV F in complex with 5C4 Fab


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth N]ATP-synt_Epse5w23N1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
G [auth M]ATP-synt_Epse5w23M1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
E [auth L]RuBisCO_large_Ne5w23L1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: RuBisCO_large_NECOD (v294.1)
D [auth H]ATP-synt_Epse5w23H1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
F [auth I]ATP-synt_Epse5w23I1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
H [auth J]ATP-synt_Epse5w23J1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
CRuBisCO_large_Ne5w23C1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: RuBisCO_large_NECOD (v294.1)
BATP-synt_Epse5w23B1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)
AATP-synt_Epse5w23A1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like IIH: Rubredoxin-relatedT: Tetrapyrrole methylase C-terminal domainF: ATP-synt_EpsECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
E [auth L],
G [auth M],
I [auth N]
Fab 5C4 L-KAPPA Mus musculus (house mouse) IGKV3-10*01, IGKJ4*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-2C_KAPPA IMGT (202612-0)
D [auth H],
F [auth I],
H [auth J]
Fab 5C4 VH-CH1 Mus musculus (house mouse) IGHV14-3*02, IGHJ4*01, IGHG2C*01, IGHG2C*02, IGHG2C*03 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-2C_KAPPA IMGT (202612-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
E [auth L],
G [auth M],
I [auth N]
Light ChainIGKV3 Kappafusion glycoprotein f0SAbDab (2026-03-27)
D [auth H],
F [auth I],
H [auth J]
Heavy ChainIGHV14 -fusion glycoprotein f0SAbDab (2026-03-27)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E [auth L],
G [auth M],
I [auth N]
5C4 Fab light chain---
D [auth H],
F [auth I],
H [auth J]
5C4 Fab heavy chain---
A, B, C
Fusion glycoprotein F0

InterPro: Protein Family Classification InterPro Database Homepage